Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1985 127 5e-24 seq20 125 2e-23 seq81637 118 2e-21 seq8098 113 1e-19 seq175 84.2 5e-11 >seq1985 Length=32442 Score = 127 bits (140), Expect = 5e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| |||| ||| || || || | ||||| || ||||| || || ||||| Sbjct 32427 ATGCCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCT 32368 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| ||||| ||||| || || || || || || | |||||| || || Sbjct 32367 GCGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGG 32308 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| |||||||| || ||||| || | || || | || Sbjct 32307 GGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCC 32248 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| || || || ||||| || || || || || || || ||||||||||||| Sbjct 32247 ACCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTTGT 32193 >seq20 Length=4946952 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || || || || Sbjct 2722216 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAGCTGCTTGCCT 2722275 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || ||||| | ||| || || ||||| || ||||| |||||||| ||||| || || Sbjct 2722276 GCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 2722335 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 2722336 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 2722395 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2722396 TTCACGAAGATCTGCAT 2722412 >seq81637 Length=1039 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| |||| || || ||||| | ||||| || ||||| || || ||||| Sbjct 143 ATCCCACCTCGAAGCCGGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCT 202 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || || || || | |||||| || || || Sbjct 203 GAGAGGGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGG 262 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | || || | || Sbjct 263 GGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCA 322 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 323 ACCTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 372 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| |||| || || || || | ||||| || || || || || ||||| Sbjct 599 ATCCCACCTCGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCT 658 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| ||||| || || || || || || || || | |||||| || || Sbjct 659 GCCAGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGG 718 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||||||||| || || ||||| || | ||| || | || Sbjct 719 GGAATCCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCC 778 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 779 ACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| |||| ||| || || || | ||||| || ||||| || || ||||| Sbjct 827 ATGCCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCT 886 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| ||||| | ||| || || || ||||| |||| ||| || || || Sbjct 887 GCCAGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGG 946 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| ||||| || || || | || || | || Sbjct 947 GGGATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCC 1006 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || ||||| || || || ||| Sbjct 1007 ACCTCCAGCGTGATGGTCTTGCCCGTCAGAGTT 1039 >seq8098 Length=4112 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| |||| ||| || || || | ||||| || ||||| || || ||||| Sbjct 189 ATGCCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCT 130 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| ||||| ||||| || || || || || |||||||| || || || Sbjct 129 GCGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGG 70 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || || ||||| |||||||||||||| || ||||| || | ||| || Sbjct 69 GGAATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTCTCGATGGTGTC 20 >seq175 Length=1232269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| || || || |||||||||||||| |||||| | ||||| ||| || Sbjct 439709 GCCTTTGCTGCTGTCGAGGGCATCTTCTTTTCGGGGTCGTTTGCCTCCATCTTCTGGCTG 439768 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 ||||| | || || ||||| || | || ||||| || || | || ||| | ||||| Sbjct 439769 AAGAAGCGTGGTCTCATGCCCGGCCTCACATTCTCCAATGAGCTCATTAGCCGTGACGA 439827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150127858851500