Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq53 107 1e-18 >seq53 Length=3035741 Score = 107 bits (118), Expect = 1e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||| || || ||||| | | ||||||||| ||||| || || || ||||| Sbjct 2983581 CATGTCGGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGACCCAGGTC 2983640 Query 25833 TCCATCTTCCCTGTGCTCA---AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGC 25889 ||| || || | |||| |||||| | |||| ||| | | || || ||||| Sbjct 2983641 TCCCTCCTCGC---GCTCGGGGAAGCCCTGCCGGTCCAGGAAGGCCCGCGAGCCGTTGGC 2983697 Query 25890 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||||| || ||||| |||||||||| |||| || |||||||| Sbjct 2983698 GTCCCAGATCTTGACGCCCTTGGCGGAGAGCTCCTTGGCATTGGTGGACCC 2983748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| ||||| | |||| | Sbjct 2982901 GCAATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGCACCCCAAGTCCCAGG 2982960 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | |||| | |||||| ||||| || || |||||| | || ||||| || || || Sbjct 2982961 T-CAGCCGATCGCTGGTACAGCTGGCATGACAGCTCTCCATCCGCGACGTAGAATTGGCA 2983019 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 || | || ||| ||||| || || || || Sbjct 2983020 CAGTGCGTGGCATGGAGGCAGCGCCATGAG 2983049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339780575099625