Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq64978 86.0 3e-12 seq345 86.0 3e-12 seq170 86.0 3e-12 seq43 86.0 3e-12 seq82759 84.2 1e-11 seq16554 84.2 1e-11 seq9662 82.4 4e-11 seq245 82.4 4e-11 >seq64978 Length=1205 Score = 86.0 bits (94), Expect = 3e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| | ||||| | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 989 TTAAAATAAAATAATCGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 930 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| |||||||||||||| |||| Sbjct 929 ACCACGCTCTAACCAACTGAGCTAACCGGCC 899 >seq345 Length=535353 Score = 86.0 bits (94), Expect = 3e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| | ||||| | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 154897 TTAAAATAAAATAATCGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 154838 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| |||||||||||||| |||| Sbjct 154837 ACCACGCTCTAACCAACTGAGCTAACCGGCC 154807 >seq170 Length=1261927 Score = 86.0 bits (94), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAA-AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||||| ||| |||| |||| || |||||| | |||||||||| ||||||| || Sbjct 1146173 ATATAAAAT--ATAATAAAAGCATCGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGC 1146230 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||| |||||||||||||| |||| Sbjct 1146231 GTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 1146270 Score = 84.2 bits (92), Expect = 1e-11 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| || ||| |||||||| | | |||||| | |||||||||| ||||||| | Sbjct 124738 AAAT-TAAAATAAATAAAAAGTTAG--TGGCCCGTACGGGGATCGAACCCGCGACCTTGG 124682 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||| |||| ||||||||| |||| Sbjct 124681 CGTTATTAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 124641 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||| | || |||||| | |||||||||| ||||||| ||||||||| Sbjct 233899 AATAAATAAAATAACATTGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 233958 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||| ||||||||| |||| Sbjct 233959 GCACCACGCTCTAACCAGCTGAGCTAACCGGCC 233991 Score = 82.4 bits (90), Expect = 4e-11 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||| |||| |||||| | |||||||||| ||||||| ||||||||| Sbjct 391138 AATAAATAAAAT-TCAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 391082 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||| ||||||||| |||| Sbjct 391081 GCACCACGCTCTAACCAGCTGAGCTAACCGGCC 391049 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 436980 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 436921 Query 11528 CC 11529 || Sbjct 436920 CC 436919 >seq43 Length=3308076 Score = 86.0 bits (94), Expect = 3e-12 Identities = 78/97 (80%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||| | ||||||||| ||| |||||| | |||||||||| ||||||| ||||| Sbjct 563499 TAGATTAAATAAAAAACTCA---TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTT 563555 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||| |||| ||||||||| |||| Sbjct 563556 ATTAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 563592 >seq82759 Length=1029 Score = 84.2 bits (92), Expect = 1e-11 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| || ||| |||||||| | | |||||| | |||||||||| ||||||| | Sbjct 694 AAAT-TAAAATAAATAAAAAGTTAG--TGGCCCGTACGGGGATCGAACCCGCGACCTTGG 638 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||| |||| ||||||||| |||| Sbjct 637 CGTTATTAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 597 >seq16554 Length=2633 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | || |||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 282 AAAAAATAATATGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 223 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| ||||||||| |||| Sbjct 222 CGCTCTAACCAGCTGAGCTAACCGGCC 196 >seq9662 Length=3666 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1634 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1575 Query 11528 CC 11529 || Sbjct 1574 CC 1573 >seq245 Length=859455 Score = 82.4 bits (90), Expect = 4e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||| |||| |||| |||||| | |||||||||| ||||||| ||||||| Sbjct 5499 GAATTAACAAAAGCGTCAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 5442 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||| ||||||||| |||| Sbjct 5441 TAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 5407 Score = 82.4 bits (90), Expect = 4e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||| |||| |||| |||||| | |||||||||| ||||||| ||||||| Sbjct 6582 GAATTAACAAAAGTGTCAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 6525 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||| ||||||||| |||| Sbjct 6524 TAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 6490 Score = 82.4 bits (90), Expect = 4e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||| |||| |||| |||||| | |||||||||| ||||||| ||||||| Sbjct 8320 GAATTAACAAAATCGTCAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 8263 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||| ||||||||| |||| Sbjct 8262 TAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 8228 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261216726170500