Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq81637 109 5e-19 seq20 107 2e-18 seq1985 105 6e-18 seq8098 102 7e-17 >seq81637 Length=1039 Score = 109 bits (120), Expect = 5e-19 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| ||| | ||||| |||||||| | ||| || || || | || || ||| | Sbjct 620 ACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCA--GCGTACGACCATCTT 677 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || ||| | ||||| | | || || ||||| ||||| || |||||||| | Sbjct 678 CCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCT 737 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || |||||||| ||| ||||||| | || || || | |||||||| | Sbjct 738 GAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCT 797 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| || || ||||| ||||||||||||| Sbjct 798 TGCCAGTCAGCGTCTTCACGAAGATCTGCATGC 830 Score = 107 bits (118), Expect = 2e-18 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCT 94862 |||| |||||| ||||| || | ||| || || | | || || || ||| ||||||| Sbjct 170 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGGGTACGACCATCTTCCAGCT 227 Query 94863 GTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTT 94922 | || ||| | ||||| || || ||||| ||||| || || || || ||||| | ||| | Sbjct 228 GCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCT 287 Query 94923 TTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | |||||||| | | ||||||| || || || | ||||||||| || || | Sbjct 288 TGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCG 347 Query 94983 TAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || |||||||||||||||| Sbjct 348 TCAGCGTCTTGACAAAGATCTGCATGC 374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | |||| |||| |||||| |||||||| | ||| || || | | Sbjct 374 CCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTC-CGC 432 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 || || || ||| || ||||| || || | || || | | ||||| ||||| | Sbjct 433 G-AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGG 491 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | |||||||| || ||| ||| ||||||| || | Sbjct 492 GGATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAA 551 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||| || || || ||||| ||||| ||||||||||| Sbjct 552 CCTCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 >seq20 Length=4946952 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || ||||| || || | ||| || ||| || ||| | | Sbjct 2722198 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 2722257 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||||| || ||||| || |||||||| ||||| || Sbjct 2722258 TCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTA 2722317 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || || ||||| ||| ||| |||||| | ||| || || || | ||||| Sbjct 2722318 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCA-CTTGGCTCCACCTCCAGGGTGAT 2722376 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 ||| || || || || || ||||| |||||||||||| ||| Sbjct 2722377 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGATTA 2722417 >seq1985 Length=32442 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | |||| ||||| |||||| ||||| || | ||| || || | Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC--TG 32367 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 || || || ||| ||||| || || ||| | ||||| | | || || ||||| | Sbjct 32366 CGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGG 32307 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | || ||||||||||| | | ||||||| | || | Sbjct 32306 GAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCA 32247 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || || ||||| ||||| ||||||||||| Sbjct 32246 CCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 32198 >seq8098 Length=4112 Score = 102 bits (112), Expect = 7e-17 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||| || || || |||| |||| |||| || | |||||| |||||||| | ||| | Sbjct 422 TTTAAACGCCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGT 363 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | || || || ||| |||||||| || ||| | ||||| || | ||||| Sbjct 362 AGTC--TGCGAGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTG 305 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||| || || || || ||||| | || || |||||||| | | ||||||| Sbjct 304 GTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGA 245 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | |||||||| || || || || || || |||||||||||||||| Sbjct 244 TGCCTCCACCTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGC 186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | |||| ||| | ||||| ||||| || | ||| || || | Sbjct 186 CCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC--TG 129 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 || || || ||| ||||| || || ||| | ||||| | || ||||| ||||| | Sbjct 128 CGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGG 69 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||| || |||||||| | ||| ||||||||||| Sbjct 68 GAATGCCCTCTTTGTCCTGAATCTTTGCCTTGAC 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447808586505000