Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq81637 89.7 4e-13 seq8098 89.7 4e-13 seq1985 86.0 5e-12 >seq81637 Length=1039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || || |||||| Sbjct 828 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCT 769 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| |||||||| || || || || || ||| Sbjct 768 GACACCATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAA 709 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | ||||| | || ||||||||| || ||||||| | ||| || || || || Sbjct 708 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCG-TACGCTGGCAGACTACAA 650 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| || ||||| Sbjct 649 CATCCAAAAGGAGTCTAC 632 >seq8098 Length=4112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||||| |||||||| ||||| || || || || Sbjct 20 GACACCATCGAGAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAG 79 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | || |||||||||||| ||||||| Sbjct 80 CAGAGGCTGATCTTCGCCGGCAAGCAACTGGAAGATG 116 >seq1985 Length=32442 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 || |||||||||| | || || || || | || || || | || || | || || | Sbjct 32190 CAGACAAAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGG 32249 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 ||||| ||||| || ||| | ||||| |||||| ||||| || ||||| || | Sbjct 32250 AGGCCTCTGACACGATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCC 32309 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 | || |||||| | ||||| | || |||||||||||| ||||||| Sbjct 32310 CAGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATG 32354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429484718349375