Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1985 127 2e-24 seq81637 120 3e-22 seq20 105 6e-18 >seq1985 Length=32442 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| |||| || || ||||||| | || |||||| | || Sbjct 32197 AATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCCTC 32256 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| ||| ||| ||||| || || ||||| || ||||| Sbjct 32257 TGACACGATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 32316 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || |||||||| ||| | ||||||| |||||| | | || ||||| Sbjct 32317 ACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTACAA 32376 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || |||| |||||||| Sbjct 32377 CATCCAGAAGGAGTCTACTCTGCACCTGGTCCTTCGGCTGAGAGGAGG 32424 >seq81637 Length=1039 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | ||| Sbjct 828 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCT 769 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| | || | ||| |||||||| |||||||| || ||||| Sbjct 768 GACACCATCGAGAATGTCAAGGCCAAGATTCAG-GACAAAGAGGGGATTCCCCCAGACCA 710 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || |||||||| || | ||||||| ||| || ||| || ||||| Sbjct 709 ACAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACGCTGGCAGACTACAA 650 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || | || || |||| |||| || Sbjct 649 CATCCAAAAGGAGTCTACCCTCCACCTGGTCCTCCGGCTTCGAGGTGG 602 >seq20 Length=4946952 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 2722412 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 2722353 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| || ||||| Sbjct 2722352 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 2722293 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | ||||||| ||||| || ||| ||||| Sbjct 2722292 CAGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTACAAC 2722233 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || Sbjct 2722232 ATCCAGAAAGAATCCACCCTCCA 2722210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432873157941875