Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1985 95.1 1e-14 seq8098 91.5 1e-13 seq20 87.8 2e-12 seq81637 82.4 6e-11 >seq1985 Length=32442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || || || ||||||| || ||||| || Sbjct 32195 AAAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCC 32254 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || |||| ||| || || ||||||||||| ||||| || || Sbjct 32255 TCTGACACGATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGAC 32314 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || || || || |||||||| || | || ||| ||||| || | || ||| Sbjct 32315 CAACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTAC 32374 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 32375 AACATCCAGAAGGAGTCTAC 32394 >seq8098 Length=4112 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || ||||| | | Sbjct 188 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCATCT 247 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||||||||| || || || || || Sbjct 248 GACACGATTGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 307 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | || ||| ||||| || | || |||||| Sbjct 308 CAGCGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACGCTCGCAGACTACAAC 367 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || || || ||||| | ||| |||| Sbjct 368 ATCCAAAAGGAGTCTACTCTACATCTGGTTCTGCG 402 >seq20 Length=4946952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | | Sbjct 2722412 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 2722353 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| ||||| || Sbjct 2722352 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 2722293 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 2722292 CAGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTACAAC 2722233 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 2722232 ATCCAGAAAGAATCCACC 2722215 >seq81637 Length=1039 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || ||| | || || || || |||| || || || || | | Sbjct 601 GATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATC 542 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | | ||| |||||| || ||||||||||| || || || || || Sbjct 541 TGACACCATCGAGAACGTGAAAGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCA 482 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || || || ||||| ||| | || ||| ||||| || | || ||||| Sbjct 481 GCAGCGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCGCGGACTACAA 422 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| ||||| || || || Sbjct 421 CATCCAAAAGGAGTCTAC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419287433160625