Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20 194 3e-44 seq81637 167 4e-36 seq1985 165 1e-35 seq8098 154 3e-32 seq15 102 2e-16 seq27453 98.7 2e-15 seq14095 98.7 2e-15 seq175 95.1 2e-14 seq5470 91.5 3e-13 seq65151 84.2 4e-11 >seq20 Length=4946952 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || ||||| ||||| |||||||| || ||||| Sbjct 2722186 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 2722245 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || |||| || |||||||| ||| Sbjct 2722246 AGCGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGA 2722305 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| ||||| ||| |||||||||||| || || || Sbjct 2722306 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACC 2722365 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 |||| ||||||||| || ||||| |||||||| ||||| |||||||| || Sbjct 2722366 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGAT 2722415 >seq81637 Length=1039 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| ||| || || ||||| ||||||||||| || || | Sbjct 602 CCACCTCGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCC 661 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | |||||||| || ||| Sbjct 662 AGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 721 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||| |||||||| |||||||||||| | | || || Sbjct 722 ATCCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACC 781 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || || ||||| ||||| |||||||| Sbjct 782 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| || || || ||||| ||||||||||| || || | | Sbjct 374 CCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCG 433 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || ||||| || || Sbjct 434 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGG 493 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || ||||| || ||| |||||||||||| | || || || Sbjct 494 ATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACC 553 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 554 TCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 >seq1985 Length=32442 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| ||| || || ||||| || |||||||| || || | | Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCG 32365 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| |||||||| || || | |||||||| || ||| Sbjct 32364 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 32305 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || |||||||||||||| ||| || ||||| | | || || Sbjct 32304 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACC 32245 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||| |||||||| || ||||| || ||||| ||||| ||||||||| || Sbjct 32244 TCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTTG 32194 >seq8098 Length=4112 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||||| || ||||| ||||||||||| || || | ||| || | Sbjct 405 AGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGA 346 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| |||||||| || | | || ||||| || || || || ||| Sbjct 345 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCC 286 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| || ||||| | || || || |||| ||| Sbjct 285 TTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTG 226 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || |||||||| || |||||||| Sbjct 225 ATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 Score = 134 bits (148), Expect = 3e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| ||| || || ||||| || |||||||| || || | | Sbjct 186 CCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCG 127 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| |||||||| || || || || ||||| || ||| Sbjct 126 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 67 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || ||||| ||||||||||||||||| |||||||||||| | || || || Sbjct 66 ATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTCTCGATGGTGTCAGATGCCTCAACC 7 Query 68415 TCCA 68418 |||| Sbjct 6 TCCA 3 >seq15 Length=5323573 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268394 CCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCC 268453 || ||| |||| ||||||||||||||||||||||||||||| ||| |||| || || ||| Sbjct 4497540 CCCCGTCGAGGACTCTCGTGGTTGAAGAGGATGCCGTTGCAAGCGTACATCCCGTAGGCC 4497599 Query 268454 TCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGC 268494 || || |||||||||| ||||||| || ||| ||| || Sbjct 4497600 TCGCGAAAGTTCACGACGATCCAGTACGCGTACAGCTTGGC 4497640 Score = 89.7 bits (98), Expect = 9e-13 Identities = 201/298 (67%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 268500 CGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCT---TTTGAGGGATTTCTCGGACTT 268556 |||| || || || || | |||||| || | ||| | || ||||| || | || | Sbjct 4499883 CGTAGGGCGAGCGCGGGTAGAAGGGGGT---GCTCTCGCTCTGCGGGATCTCCTGCACCT 4499939 Query 268557 TGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGA 268616 |||| |||||||| ||||| || |||||||| | | || |||||| Sbjct 4499940 TGCCGTAGAGCTCGCTCGTCGACGCCTGGTAGAAGCGCACGCGGTCCGCCAGGCCGCAGG 4499999 Query 268617 TTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCG 268676 | || | || || |||| || || || |||| ||| ||||||| || || ||||| | Sbjct 4500000 TGCGCACCGCGTCCAGCAGCCGCAGCGTCCCCACGCCGTCCACGTTGGCCGTGTACTCGG 4500059 Query 268677 GCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTT 268736 || ||||| || | || || |||||||| ||||||||||| || | ||| |||| Sbjct 4500060 CCAGGTCGAAGGAGATCTTCACGTGGCTCTGCGCGCCCAGGTTGTAGATCTCGGCCGGCC 4500119 Query 268737 TGAC-CTGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 || ||| | |||||| |||||| || ||| || ||||| |||||||||| Sbjct 4500120 GCACGGCACTG-ATGATCTTGACGAGGCACGAGCTGTCCGTCAGGTCGCCGTAGTGCA 4500176 >seq27453 Length=1983 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| |||||||| | ||||||| ||| | | ||| || || Sbjct 1179 CCCTCCTTGTCATGAATCTTCCCCTTGACGACATCGATGGCGTCCGAGGCTTCGACGTCG 1238 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || ||||||||||||||||| || |||||||| Sbjct 1239 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1282 >seq14095 Length=2887 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| |||||||| | ||||||| ||| | | ||| || || Sbjct 1166 CCCTCCTTGTCGTGAATCTTCCCCTTGACGACATCGATGGCGTCCGAGGCTTCGACGTCG 1107 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || ||||||||||||||||| || |||||||| Sbjct 1106 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1063 >seq175 Length=1232269 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9892 TTTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATGACGCCCGCCTTCT 9951 |||||||||||||||| | | ||| || |||| | | |||||||||| |||| Sbjct 442018 TTTAGAAGTCTGCGTCGAGCGTGAACTGGTGGTCGACCTTAGACATGACGCCCATTTTCT 441959 Query 9952 GGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCA 10011 ||||||| | || |||||||||||||| ||| ||||| || ||||| |||| Sbjct 441958 GGTACTCAGCCACTTTCTTCTCGAAGAAGTTGGTCTTCCCCTCCAGCGAAATATTTTCCA 441899 Query 10012 TGAAGTCAAAGGGGTTCTCGGC 10033 ||||||| ||||||||||| || Sbjct 441898 TGAAGTCGAAGGGGTTCTCCGC 441877 >seq5470 Length=5243 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||| || |||||||| || | |||| || | ||||| | Sbjct 4005 CCAACTGCAGAGTGGACCCTGCGTGGATGTTGTAGAAGAAGAGGGTGCGATTGTCTTCCA 4064 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | | | | ||||||| || || || |||| || ||||| ||||||||||| || | Sbjct 4065 GCCGACTGTCCTCGAATATCAGGCTGTGCCGGTCTGGAGGAATCCCTTCCTTGTCCTGGA 4124 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGT-CTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||| ||||| |||||| | | ||| | | ||||| ||||| | | || Sbjct 4125 TCTTTGCCTTGATATCCTCGCTGGTGTCCAGAGGATACCA-TTCCACGGTGACGATCTTC 4183 Query 68433 CCCGTGAGGGTCTTGACGAATATC 68456 || || | ||||| ||||| ||| Sbjct 4184 CCTTTGGGAGTCTTCACGAAGATC 4207 >seq65151 Length=1204 Score = 84.2 bits (92), Expect = 4e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||| | | ||||| || | ||||| || | ||||| || Sbjct 714 ACCAGGTGCAGAGTGGACCCCGGCAGAATGTTGTAGTGGGAGACGGTGCGACCATCCTCC 655 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || | | |||| | || || ||||| ||||| || ||||| || |||||||| || Sbjct 654 AGCTCTCTGCTGGCGTAGATCAGCCTTTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGG 595 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTT 68431 ||||||||||| | | ||| ||||||| ||| | ||||| | | ||||||| || Sbjct 594 ATCTTTGCCTTCAGGTTCTCCGTGGTGTC-CATGAGCTGCACTTCAAGGCTGATGGTCTT 536 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| | ||||| |||||||| Sbjct 535 GCCACTCGCTGTCCTCACGAAGATCTGCAT 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920630215885000