Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq175 109 1e-18 >seq175 Length=1232269 Score = 109 bits (120), Expect = 1e-18 Identities = 99/122 (81%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 |||||| | || ||||||||||||||||| ||||| | || ||||||||||||||||| Sbjct 439709 GCCTTTGCTGCTGTCGAGGGCATCTTCTTTTCGGGGTCGTTTGCCTCCATCTTCTGGCTG 439768 Query 42771 AAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| || ||| || |||||||| ||||| ||||| || || ||||| ||| | ||||| Sbjct 439769 AAGAAGCGTGGTCTC-ATGCCCGGCCTCACATTCTCCAATGAGCTCATTAGCCGTGACGA 439827 Query 42830 GG 42831 || Sbjct 439828 GG 439829 Score = 100 bits (110), Expect = 5e-16 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | |||||||| |||||| ||||| ||||||| |||||||||| Sbjct 440909 AGGGTCTGCACTGCGACTTTGCGTGCCTCATGTTCC---GCCACCTGGTGCACAAGCCCG 440965 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | || ||| || | | ||| | | ||| |||||| || ||| ||||||| || | Sbjct 440966 AGGAGTCGCGTGTACAGCAGATCGTGATGGACGCCGTGATCATTGAGCAGGAGTTTCTGA 441025 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | | |||||||||| ||| ||||||||||| ||||||||| |||||||| Sbjct 441026 CTGACGCGCTGCCCGTCAACCTTATCGGCATGAACTGTGACCTCATGAAGCAGTACATCG 441085 Query 43009 AGTACGTCGCCGAC 43022 ||| || |||||| Sbjct 441086 AGTTTGTGGCCGAC 441099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943322559830000