Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq81637 100 2e-16 seq8098 98.7 8e-16 seq1985 95.1 1e-14 seq2365 84.2 2e-11 seq387 84.2 2e-11 seq35704 82.4 6e-11 >seq81637 Length=1039 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||||||| || ||||| || || || ||||||||| |||||||| |||||| Sbjct 830 CCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 889 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || ||||||||||||||||| || ||||| |||||||| || Sbjct 890 AGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTC 942 >seq8098 Length=4112 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||||||| || ||||| || || || ||||||||| |||||||| ||||| Sbjct 186 CCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCG 127 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||||||| || ||||| | |||||| || || Sbjct 126 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 67 Query 34021 ACGCTCTCTTTGTCCATAATTTTT 34044 | || |||||||||| ||| ||| Sbjct 66 ATGCCCTCTTTGTCCTGAATCTTT 43 >seq1985 Length=32442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||||||| || ||||| || || || ||||||||| |||||||| ||||| Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCG 32365 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||||||| || ||||||||||| || || || Sbjct 32364 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 32305 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 32304 ATGCCCTCCTTGTCC 32290 >seq2365 Length=23418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 18198 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 18257 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 18258 CATAACTGATTTAATGAGCCATTCG 18282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 18198 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 18257 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 18258 CATAACTGATTTAATGAGCCATTCG 18282 >seq387 Length=463322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 422123 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 422182 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 422183 CATAACTGATTTAATGAGCCATTCG 422207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 422123 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 422182 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 422183 CATAACTGATTTAATGAGCCATTCG 422207 >seq35704 Length=1717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/87 (84%), Gaps = 7/87 (8%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG---AGTAAGATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||| ||| | || || || ||||| Sbjct 95 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCAA--TCAAAGGA 152 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 153 ACCATAACTGATTTAATGAGCCATTCG 179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/87 (84%), Gaps = 7/87 (8%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG---AGTAAGATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||| ||| | || || || ||||| Sbjct 95 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCAA--TCAAAGGA 152 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 153 ACCATAACTGATTTAATGAGCCATTCG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396645624072250