Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20 145 2e-29 seq81637 140 8e-28 seq1985 131 4e-25 seq8098 116 9e-21 >seq20 Length=4946952 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| |||||| ||||| || ||||||| Sbjct 2722186 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 2722245 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || ||||| | || || ||||||||||| || ||||| || || Sbjct 2722246 AGCGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGA 2722305 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || |||||||| || || | || || | || || Sbjct 2722306 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACC 2722365 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| || ||||| ||||| ||||| |||||||| || Sbjct 2722366 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGAT 2722415 >seq81637 Length=1039 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||||||||| || ||||| | || || || ||||| Sbjct 410 TCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAA 469 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || ||| ||||| || || || ||||||||||| ||||||||| Sbjct 470 ATCAGCCGCTGCTG---GTCTGGGGGGATCCCCTCCTTGTCCTGGATTTTTGCTTTCACG 526 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || |||||||| ||||| || ||||||||||| Sbjct 527 TTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTC 586 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 587 ACGAAGATCTGCAT 600 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| || ||||| || || ||||| | || || || |||||| Sbjct 638 TCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAAG 697 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| |||||||| |||||| || || ||||| ||||| || || || || || Sbjct 698 ATCAGGCGCTGTTG---GTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCCTTGACA 754 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| ||||| || ||||| ||||| Sbjct 755 TTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTC 814 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 815 ACGAAGATCTGCAT 828 Score = 107 bits (118), Expect = 5e-18 Identities = 130/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || |||||||| || ||||| ||||| || || ||||| Sbjct 866 TCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAA 925 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || |||||| || || || || ||||| || || ||||||||| Sbjct 926 ATCAGCCGCTGCTGG---TCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCTTTCACG 982 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | || | || || || |||||||| ||||| || |||||||| Sbjct 983 TTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGAGT 1038 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || |||||||| || ||||| || |||||| || || ||||| |||||||| Sbjct 2 TTGCCGGCGAAGATGAGCCGCTGCTGG---TCTGGGGGGATCCCCTCTTTGTCCTGGATC 58 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || ||||||||||| || || | || | || || || || ||||| ||||| ||| Sbjct 59 TTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCG 118 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||| Sbjct 119 GTCAGCGTCTTCACGAAGATCTGCAT 144 >seq1985 Length=32442 Score = 131 bits (144), Expect = 4e-25 Identities = 149/199 (75%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| ||||||||||| || ||||| | ||| || || |||||| Sbjct 32388 TCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 32329 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| |||||||| |||||| || || || || |||||||| || || || || Sbjct 32328 ATCAGGCGCTGTTGG---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACA 32272 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| ||||| || ||||||||||| Sbjct 32271 TTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTC 32212 Query 288460 ACGAATATCTGCATTATGT 288478 ||||| ||||||||| ||| Sbjct 32211 ACGAAGATCTGCATTTTGT 32193 >seq8098 Length=4112 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||||||||| || ||||| | || || || |||||| Sbjct 378 TCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAG 319 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || ||| ||||| || || || |||||||| ||||| || || Sbjct 318 ATCAACCGCTGCTG---GTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACA 262 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| ||||| || ||||| |||||| Sbjct 261 TTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTG 202 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 201 ACAAAGATCTGCAT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178352679017750