Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1985 132 5e-26 seq81637 131 2e-25 seq8098 122 9e-23 seq20 116 4e-21 >seq1985 Length=32442 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || |||||||| ||||||| ||||| | || Sbjct 32410 AAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATC 32351 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || ||||||||||| | || || ||||| ||||| || ||||| || || || || Sbjct 32350 TTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTC 32291 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| ||| | || ||| ||| ||||| || | ||| | ||| Sbjct 32290 CTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGT 32231 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| ||| || ||||| || |||||||| Sbjct 32230 CTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTT 32195 >seq81637 Length=1039 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || ||||| |||||||| || |||| ||||| | || Sbjct 388 AAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATC 447 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||| || |||| |||||||||||||| || || || || || || || Sbjct 448 TTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTC 507 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | |||||||||| || ||| | || ||| || || || || | || | || Sbjct 508 CTGGA-TTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGG 566 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| |||| ||| || ||||| || ||||| Sbjct 567 TCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| ||||| | || || | ||||| |||||||||||| Sbjct 632 GTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCCAGCTGCTTGCCG 691 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||| ||||| || ||||| || ||||| || || || || ||| Sbjct 692 GCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCCTTG 751 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || ||| ||| ||||| || | ||| | ||||||||| |||| || Sbjct 752 ACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTC 811 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 812 TTCACGAAGATCTGCAT 828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| |||| || ||| || | ||| Sbjct 161 AGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATCT 220 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || | || ||||||||| || || || || || || || Sbjct 221 TCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 280 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || ||| || || || || | || | |||| Sbjct 281 TGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTC 340 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 341 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || |||||||| ||||| | ||||| | || Sbjct 844 AAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATC 903 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||||||||| |||| |||||||||||||| || || || || || || || Sbjct 904 TTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTC 963 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| || ||| | || ||| || ||||| || | || | || Sbjct 964 CTG-AATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGG 1022 Query 64410 TCTTGCCGGTCAAAGTT 64426 ||||||| |||| |||| Sbjct 1023 TCTTGCCCGTCAGAGTT 1039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||||||||| | ||||||||||||||||| || || || || ||||| || || | | | Sbjct 1 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATCCCCTCTTTGTCCTGGA-TCT 59 Query 64360 TTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 ||||||| || ||| | || ||| || || || || | ||| | ||||||||||| Sbjct 60 TTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCGG 119 Query 64419 TCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || ||||| || ||||| Sbjct 120 TCAGCGTCTTCACGAAGATCTGCAT 144 >seq8098 Length=4112 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || ||||| |||||||| ||||||| ||||| | ||| Sbjct 399 AGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 340 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || | |||||||||||| || || || || || || || Sbjct 339 TCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 280 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || ||| || ||||| || | ||| | |||| Sbjct 279 TGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTC 220 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 219 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || |||||||| ||||||| ||||| | || Sbjct 172 AAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATC 113 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || ||||||||||| | || |||| ||||||||| || ||||| || ||||| || Sbjct 112 TTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTC 53 Query 64351 TTGTATTTTTTGCTTTACA 64369 || || ||| ||| ||| Sbjct 52 CTGAATCTTTGCCTTGACA 34 >seq20 Length=4946952 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 2722216 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAGCTGCTTGCCT 2722275 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||||||||||||||| ||||| || || || || || ||| Sbjct 2722276 GCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 2722335 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| | ||||| || | || | ||||||||| |||| || Sbjct 2722336 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 2722395 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 2722396 TTCACGAAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499106901145000