Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8098 129 6e-25 seq81637 120 3e-22 seq1985 98.7 9e-16 >seq8098 Length=4112 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| ||||| |||||||| ||||| || ||||| || | | ||||||| | Sbjct 402 CGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCA 343 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| ||||||| |||||||| || || || || ||||||||| Sbjct 342 TCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTG 283 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | || | ||||| | ||| || || | || | Sbjct 282 TCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATG 223 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || ||||| ||||||||| || Sbjct 222 GTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGCCT 184 >seq81637 Length=1039 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | |||||||| ||||| || ||||| || | | ||||||| ||| || Sbjct 392 ACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCTTCA 451 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || |||||| | |||| |||||||| || || || || |||||||||||| | Sbjct 452 AGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 511 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||||| ||| || | | |||| |||||| | ||| || || | || | || || Sbjct 512 ATTTT-TGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTT 570 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||||||| || || || |||||||| Sbjct 571 GCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | || ||| ||| || ||||| || || Sbjct 176 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATCTTCCAGCTGCTTGCCG 235 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | |||||| || || || || |||||||||||| || || |||| Sbjct 236 GCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTG 295 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||| || || | || | || ||||| ||||| || Sbjct 296 ACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGCGTC 355 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 356 TTGACAAAGATCTGCATGCCT 376 >seq1985 Length=32442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | | ||||||| ||| || || || || || Sbjct 32394 GTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCCAGTTGCTTGCCG 32335 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || || || || ||||||||||||||| ||| || |||| Sbjct 32334 GCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTG 32275 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||| || || | || | || ||||| |||||||| Sbjct 32274 ACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCCGTCAGAGTC 32215 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 32214 TTCACGAAGATCTGCAT 32198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474988893670000