Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq8098 168 8e-37 seq1985 159 4e-34 seq81637 147 2e-30 seq20 129 7e-25 >seq8098 Length=4112 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| |||||||| | ||| |||||||||||| |||||||| | Sbjct 415 GCCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGC 356 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || ||||||||||||||||| ||||| ||||||||||| | || Sbjct 355 GAGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGG 296 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| ||||||| ||||| || | | |||||| | ||||| Sbjct 295 GATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCAC 236 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| |||||||||||||| || |||||||| ||||| Sbjct 235 CTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | || | ||||| || | ||| |||||| ||||| |||||||| | Sbjct 188 TGCCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 129 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || || |||||||||||||| |||| | ||||||||| | | Sbjct 128 CGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGG 69 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || ||| |||||| ||||| ||||| Sbjct 68 GAATGCCCTCTTTGTCCTGAATCTTTGCCTTGA 36 >seq1985 Length=32442 Score = 159 bits (176), Expect = 4e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | || | ||||| |||| ||| |||||| ||||| |||||||| | Sbjct 32426 TGCCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTG 32367 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || || |||||||||||||| |||| |||||| ||||| | | Sbjct 32366 CGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGG 32307 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||| | |||| Sbjct 32306 GAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCA 32247 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| ||||||||||| || || || ||||| ||||||||| Sbjct 32246 CCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTTG 32194 >seq81637 Length=1039 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| ||||| |||||||| || || || || | || || Sbjct 164 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATCTTCC 223 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| ||||| | ||||||||| | || | | |||||||||| Sbjct 224 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGA 283 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | |||||| | || || |||| ||||||||| ||| Sbjct 284 ATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTG 343 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| || |||||||| ||||| Sbjct 344 CCCGTCAGCGTCTTGACAAAGATCTGCAT 372 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | || | |||||||||| ||| |||||||||||| |||||||| | Sbjct 372 TGCCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCG 431 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| ||||| |||| ||||||||||| | | Sbjct 432 CGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGG 491 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| ||| || | ||| || || | | ||||| | || Sbjct 492 GGATCCCCTCCTTGTCCTGGAT-TTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCA 550 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||||||| ||||||||||| || || || ||||| ||||| Sbjct 551 ACCTCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||||||||| |||||||| | || || || | || || Sbjct 620 ACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCC 679 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||| |||||| ||||| | || | | ||| |||||| Sbjct 680 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGA 739 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||||| | ||||| |||| |||||||| ||| Sbjct 740 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTG 799 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || ||||| ||||| Sbjct 800 CCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | || | ||||| || | ||| |||||| ||||| |||||||| | Sbjct 828 TGCCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 887 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || | |||||||||||||| |||| ||||||||||| | | Sbjct 888 CCAGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGG 947 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||||| || | || | | |||||| | |||| Sbjct 948 GGATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCA 1007 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | |||| ||||||||| ||||||||||| ||| Sbjct 1008 CCTCCAGCGTGATGGTCTTGCCCGTCAGAGTT 1039 >seq20 Length=4946952 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| | || || ||||||||||| ||||| Sbjct 2722222 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2722281 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | || ||||| ||| |||||| ||| | || Sbjct 2722282 ATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 2722341 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||||| |||| |||||||| ||||||||||| || || || Sbjct 2722342 TCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 2722401 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 2722402 AAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564629885535000