Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq81637 158 1e-33 seq1985 150 2e-31 seq8098 136 4e-27 seq20 123 2e-23 seq175 93.3 4e-14 >seq81637 Length=1039 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| |||||||| | || || ||||| | Sbjct 600 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 541 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| |||||||| ||||| ||||| || ||| | ||||| Sbjct 540 GACACCATCGAGAACG-TGAAAGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCA 482 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| |||| ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 481 GCAGCGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCGCGGACTACAA 422 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || |||||| |||| || || |||| || ||| Sbjct 421 CATCCAAAAGGAGTCTACTCTGCATCTGGTCCTTCGGCTGAGGGGAGGC 373 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || || |||||| | Sbjct 828 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCT 769 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||||||||| |||||| | |||||| Sbjct 768 GACACCATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAA 709 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | || || || ||||||||| Sbjct 708 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACGCTGGCAGACTACAAC 649 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| | || || || |||| || || Sbjct 648 ATCCAAAAGGAGTCTACCCTCCACCTGGTCCTCCG 614 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 38261 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGC 38319 ||| || |||||||| |||||||| | || || ||||| | |||| | || |||| Sbjct 1039 AACTCTGACGGGCAAGACCATCACGCTGGAGGTGGAGGCATCTGACACGATTGAGAACG- 981 Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 | |||| || || | ||||| ||||| || ||| | ||||| |||||||| |||| || Sbjct 980 TGAAAGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAGCAGCGGCTGATTTTCG 921 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| || |||| || | ||||| || |||||||||||||| ||||| | | Sbjct 920 CCGGCAAGCAATTGGAAGATGGTCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCTA 861 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || |||| || || ||||||| ||| Sbjct 860 CCCTCCACCTGGTTCTTCGGCTGAGAGGAGGC 829 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| |||||||| | || || ||||| | Sbjct 372 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 313 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || || | ||||| ||||| || ||| | ||||| Sbjct 312 GACACGATTGAGAATG-TCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCA 254 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| || | || |||||| |||||||| Sbjct 253 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGACTACAA 194 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || |||||| | || || || Sbjct 193 CATCCAGAAGGAGTCTACTCTGCATCTCGTTCTCCG 158 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || || ||||| | Sbjct 144 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACTCTGGAGGTTGAGGCATCT 85 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | |||| ||| |||| ||||||||||| || ||| | ||||| Sbjct 84 GACACGATTGAGAACG-TGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCCCCAGACCA 26 Query 38363 ACAGCGGCTCATTTACGCGGGCAA 38386 ||||||||||| | ||| ||||| Sbjct 25 GCAGCGGCTCATCTTCGCCGGCAA 2 >seq1985 Length=32442 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || |||||||| |||||||| | || || |||||| Sbjct 32195 AAAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCC 32254 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | || || | | || | ||| |||| ||||| ||||| |||||| | || Sbjct 32255 TCTGACACGATTGAGAATG-TCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 32313 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | ||| ||||| || ||||| || | ||||| ||| ||||| Sbjct 32314 CCAACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTA 32373 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || ||||| |||| || || ||||||| ||| Sbjct 32374 CAACATCCAGAAGGAGTCTACTCTGCACCTGGTCCTTCGGCTGAGAGGAGGC 32425 >seq8098 Length=4112 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| |||||||| | || || ||||| | Sbjct 188 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCATCT 247 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 248 GACACGATTGAGAATG-TCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCA 306 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 307 GCAGCGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACGCTCGCAGACTACAA 366 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || || ||| |||| ||||| |||| || ||| Sbjct 367 CATCCAAAAGGAGTCTACTCTACATCTGGTTCTGCGGCTGAGGGGTGGC 415 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||||||||| |||||| | ||||| ||| |||| || | ||| ||||| || ||||| Sbjct 53 GACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAACTGGAA 112 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| ||| |||||||||||||| ||||| | || || || |||| || Sbjct 113 GATGGTCGCACGCTCGCAGACTACAACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTT 172 Query 38457 CGTTTGAGAGGCGGC 38471 || ||||||| ||| Sbjct 173 CGGCTGAGAGGAGGC 187 >seq20 Length=4946952 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| | | Sbjct 2722412 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 2722353 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| ||||||| Sbjct 2722352 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCA 2722294 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 2722293 GCAGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTACAA 2722234 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || |||| |||||| Sbjct 2722233 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGT 2722197 >seq175 Length=1232269 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||||||| || |||||||||||||||||||| || ||||| || || ||||| ||| Sbjct 438567 GACCAGATTCTCATTGACGATGCCGTCGCTGGCAGCAAAAAACGCGAGGACGTGGGAGAT 438508 Query 133338 GAAATGGCGCTCGT-TGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCA 133396 ||| || |||| | || | |||| ||||||||| || || ||||||||||||| Sbjct 438507 GAAGTGTTGCTCCTCTGGC-TTCAGCTGCTCCCAGTGCTGCTGATCTTTGGACAGGTCCA 438449 Query 133397 CCT 133399 ||| Sbjct 438448 CCT 438446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | |||||| || ||| ||| || | |||||||||||| || || || | Sbjct 439829 CCTCGTCACGGCTAATGAGCTCATTGGAGAATGTGAGGCCGGGCATGAGACCACGCTTCT 439770 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| ||| || ||||||||||||| ||||||||| || || || | Sbjct 439769 TCAGCCAGAAGATGGAGGCAAACGACCCCGAAAAGAAGATGCCCTCGACAGCAGCAAAGG 439710 Query 133037 CCACCAGGCGCTCGCC 133052 ||| | ||| || || Sbjct 439709 CCAGAACGCGTTCACC 439694 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||||||||||||||| ||||||||||| ||| |||| || || || | || | Sbjct 441107 AGCAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATGAGGTCACAGTTCATGCCGATA 441048 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || || |||||||| || || ||||| ||||| ||| || ||||| | ||| Sbjct 441047 AGGTTGACGGGCAGCGCGTCAGTCAGAAACTCCTGCTCAATGATCACGGCGTCCATCACG 440988 Query 132841 ATTTCCCTAACGCGCGCCGCGCTCGGCCGT-TGCACCAAATGCTTGAACATCAAGCAAGC 132899 || | | || |||| | | ||||| | | ||||||| || |||||| | ||| || Sbjct 440987 ATCTGCTGTACACGCGACTC-CTCGGGCTTGTGCACCAGGTGGCGGAACATGAGGCACGC 440929 Query 132900 AAAGTCGCAATGCAAGCCCT 132919 ||||||||| |||| |||| Sbjct 440928 AAAGTCGCAGTGCAGACCCT 440909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/117 (77%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||| ||||||||||| || | ||||| |||||||| | ||||||||| |||||||| Sbjct 438817 GTACGTGTCGATGAGAAGGCTG--TACATCTCCGAGTGGATGTTCTCCATTGCGATTTGG 438760 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || ||||| || ||||| | ||||||||| || ||| ||||| ||| Sbjct 438759 AAGCCATAGAAGCATCGTGCCTCTGTGATCTGCACTTCCTGGCTGAAGCGCTCCACC 438703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634332720000