Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1985 156 9e-33 seq20 154 3e-32 seq81637 152 1e-31 seq2491 100 6e-16 seq41517 93.3 9e-14 >seq1985 Length=32442 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| || || || || | |||||||| Sbjct 32406 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCC 32347 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || || ||||||||||| |||||||| || ||||| || Sbjct 32346 AGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 32287 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| |||||||| ||||| || ||||| || || || | ||||| Sbjct 32286 ATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTG 32227 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| ||| || ||||| | ||||||| Sbjct 32226 CCCGTCAGAGTCTTCACGAAGATCTGCATTT 32196 >seq20 Length=4946952 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 2722204 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 2722263 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 2722264 AGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGG 2722323 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| |||| ||||| || ||||| | ||| Sbjct 2722324 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTTGGCTCCACCTCCAGGGTGATGGTC 2722380 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 2722381 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 >seq81637 Length=1039 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| ||||| || ||||| || || || || | |||||||| Sbjct 620 ACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCC 679 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || ||||||||||| ||||| || |||||||| ||| Sbjct 680 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGA 739 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| |||||||| || ||||| || || || | ||||| Sbjct 740 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTG 799 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 800 CCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || || ||||| || || || || | |||||||| Sbjct 847 AACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCTTC 906 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || ||||| || || || || |||||||| || || || || ||||| || Sbjct 907 CAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTG 966 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || || ||||||||||| ||||| || ||||| || || || | ||||| Sbjct 967 AATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTCTT 1026 Query 195111 TCCTGTCAAAGTT 195123 || |||| |||| Sbjct 1027 GCCCGTCAGAGTT 1039 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || |||||||| || || || |||||||| || || || Sbjct 1 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATCCCCTCTTTGTCCTGGATCTT 60 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||||||||| ||||| || || || || || || | ||||| || || Sbjct 61 TGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCGGT 120 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 121 CAGCGTCTTCACGAAGATCTGCAT 144 >seq2491 Length=20969 Score = 100 bits (110), Expect = 6e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC 194983 |||| | ||| ||||| ||||||||| || ||||| ||||| |||| || || || | Sbjct 8636 GTCTGACAACCAGGTGCAGAGTGGACCCTGCCTGAATGTTGTAGTCGGTGAGGGTGCTAC 8577 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||| | ||| | | | ||||||| | || | || || ||||||||||| ||||| | Sbjct 8576 CATCCTTCAGCCGTCTGCATGCGAAGGTCAGACTCTGCTGTTCTGGAGGAATCCCTTCCT 8517 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 | || || || | ||| | |||||| ||||||||| ||||||||||||| | Sbjct 8516 TCTCCTGGATCGTCGCCTTCAGGTTCTCCGTGGTGTCCGTGGGCTCCACTTCAAGGGCGA 8457 Query 195104 CCGTCTTTCC 195113 ||||| || Sbjct 8456 TGGTCTTCCC 8447 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||| ||||||||| | || ||||| ||||| |||| ||||| | |||||||| ||| Sbjct 11506 AGGTACAGAGTGGACCCCTTCTGAATGTTGTAGTCGGTGAGAGTGCGACCATCTTCCAGC 11447 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 | | | |||||| | || | || || ||||||||||| || || | || || || Sbjct 11446 CGTCTGCATGCGAATGTCAGACTCTGCTGTTCTGGAGGAATCCCCTCCTGCTCCTGGATC 11387 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 | | ||| | |||||| ||||||||| ||||||||||||| | ||||| || Sbjct 11386 GTCTCCTTCAGGTTCTCCGTGGTGTCCGTGGGCTCCACTTCAAGGGCGATGGTCTTCCCG 11327 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||||| | ||||| Sbjct 11326 CTCACTGTCCTCACGAAGATCTGCAT 11301 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || ||||| ||||| | || || || | ||||| || Sbjct 10687 ACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTGGGAGAGGGTGCGACCATCCTCC 10628 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| | | ||| |||| || | || |||| |||||||| ||||| | || || Sbjct 10627 AGCTGTCTGCTGGCGTAGATCAGCCTCTGCTGGTTCGGAGGAATCCCTTCCTGCTCCTGG 10568 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || | ||| | |||||| ||||||| | ||||||||||||| | ||||| Sbjct 10567 ATCATCGTCTTCAAGTTCTCCGTGGTGTCTGTGGGCTCCACTTCAAGGGCGATGGTCTTC 10508 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || || || ||||||| | ||||| |||| Sbjct 10507 CCGCTCGCTGTCCTTACGAAGATCTGCATCTTAT 10474 >seq41517 Length=1578 Score = 93.3 bits (102), Expect = 9e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| ||||||||| || ||||| ||||| |||| || | | ||||| || ||| Sbjct 1153 AGGTGCAGAGTGGACCCTGCCTGAATGTTGTAGTCGGTGAGGATGCGACCATCCTCCAGC 1094 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 | | | ||||||| | || | || || ||||||||||| || || | || || || Sbjct 1093 CGTCTGCATGCGAAGGTCAGACTCTGCTGTTCTGGAGGAATCCCCTCCTGCTCCTGGATC 1034 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 | | ||| | |||||| ||||||||| ||||||||||||| || ||||| || Sbjct 1033 GTCTCCTTCAGGTTCTCCGTGGTGTCCGTGGGCTCCACTTCAAGGGCGACGGTCTTCCCG 974 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 ||| || | ||||| | ||||| |||| Sbjct 973 CTCACTGTCCTCACGAAGATCTGCATCTTAT 943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108257313057875