Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq81637 118 7e-22 seq8098 111 1e-19 seq1985 107 1e-18 seq20 107 1e-18 >seq81637 Length=1039 Score = 118 bits (130), Expect = 7e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || ||||| || Sbjct 182 TCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATCTTCCAGCTGCTTGCCGGCGAAG 241 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||||||| |||||| ||||| || Sbjct 242 ATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGAC--AT 299 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| ||| |||||||| || | || ||||| || ||||| || ||||| | Sbjct 300 TCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGA 359 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 360 CAAAGATCTGCAT 372 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| || | |||| || | || || || || ||||| ||||||| Sbjct 374 CCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCG 433 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || || || || || || ||||||||| | || Sbjct 434 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGG 493 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| || || ||| ||| | || | ||| |||||||| Sbjct 494 ATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACC 553 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 554 TCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | || | || |||| |||||||| || ||||| || Sbjct 638 TCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAAG 697 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || |||||| | || | |||||| ||||| |||||| ||||| || Sbjct 698 ATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCCTTGAC--AT 755 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| |||||| || || | || ||||| || || || || ||||||| Sbjct 756 TCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCA 815 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 816 CGAAGATCTGCAT 828 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||| || | ||||| ||| | || || ||||| ||||| ||||| | Sbjct 830 CCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 889 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| || || ||||| || || || || ||||||||| | || Sbjct 890 AGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGG 949 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| |||||| ||| ||| | |||| ||| ||||| || Sbjct 950 ATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACC 1009 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 || | || ||||| || ||||| ||||| Sbjct 1010 TCCAGCGTGATGGTCTTGCCCGTCAGAGT 1038 >seq8098 Length=4112 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| || || ||||| || | || || || || ||||| ||||| | Sbjct 414 CCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCG 355 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || ||||| || || | || ||||||||| | || Sbjct 354 AGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGG 295 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | |||||||||||| |||||| ||||| || || |||| ||| ||||| | Sbjct 294 ATCCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCAATCGTGTCAGATGCCTCCA 237 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 236 CCTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 >seq1985 Length=32442 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||| || | |||| ||| | || || ||||| ||||| ||||| | Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCG 32365 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| ||||| || || ||||| || || || || || |||||| | || Sbjct 32364 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 32305 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || |||| ||| |||||| | Sbjct 32304 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCAATCGTGTCAGAGGCCTCCA 32247 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | || ||||| || ||||| ||||||||||| ||||||||||| || Sbjct 32246 CCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTT 32195 >seq20 Length=4946952 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || || | || |||| ||| Sbjct 2722204 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 2722263 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || |||||||| |||||||| | || | || ||||| || Sbjct 2722264 AGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGG 2722323 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | |||| | ||| || || | ||| ||||| || Sbjct 2722324 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 2722383 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| ||||||||||| Sbjct 2722384 CCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324292848849000