Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq33263 122 1e-21 seq17 109 7e-18 seq1427 102 1e-15 seq175 93.3 5e-13 >seq33263 Length=1786 Score = 122 bits (134), Expect = 1e-21 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||| |||||||| ||||||||| ||| || || | |||||| ||||||||||| Sbjct 208 GCCGCTAACTACCTGGACATCAAGGGTCTTCTGGACGTCACCTGCAAGACTGTGGCCAAC 149 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||| | || ||||||||||||||||| || ||||||||| ||| Sbjct 148 ATGATCAAGGGCAAGACTCCAGAGGAGATCCGCAAGACGTTCAACATCAAGAACG 94 >seq17 Length=5228726 Score = 109 bits (120), Expect = 7e-18 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAGGACATGCCCTGGTCG 733169 ||||||||||| ||||||| | || || | || | ||||||||| ||||| | || Sbjct 3053824 CGCCACGGCCAGAAGGGCATCTTGAGCCGGCTGTGGCGCACCGAGGATATGCCGT--TCA 3053767 Query 733170 CCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 || | |||||| |||||||||||| || |||||||||||| |||||||||||||| Sbjct 3053766 GCGAG-GGCGGCATGACGCCCGACATCCTGTTCAACCCGCACGGATTCCCGTCGCGCATG 3053708 Query 733230 ACCATGGGCAAGATGCTCGAG 733250 ||||| |||| | || ||||| Sbjct 3053707 ACCATCGGCATGCTGATCGAG 3053687 >seq1427 Length=60525 Score = 102 bits (112), Expect = 1e-15 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| ||||||||||||| ||| | | || ||||| |||||||||||||||| ||| Sbjct 37562 AGCGGCTCAAGGGCAAGGAAGGTCGCGTGCGAGGCAACCTCATGGGCAAGCGCGTCGACT 37621 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | |||||| | ||||||| ||||||||| | || ||| ||| |||| ||||||| Sbjct 37622 TCTCGGCGCGCACGGTCATCACGCCCGACCCCAACCTCTCCATCGACCAGGTCGGCGTGC 37681 Query 507225 C 507225 | Sbjct 37682 C 37682 >seq175 Length=1232269 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/201 (72%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| | |||||| ||||||||||||||||| ||||||| | |||||||||||| Sbjct 441107 AGCAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATGAGGTCACAGTTCATGCCGATA 441048 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||||| || ||| |||||| | ||| || ||||| || | | | Sbjct 441047 AGGTTGACGGGCAGCGCGTCAGTCAGAAACTCCTGCTCAATGATCACGGCGTCCATCACG 440988 Query 868931 ATCTGCCTGGGCACGTCG--GCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 ||||| ||| |||| || || |||||||| || || | | | ||||| | Sbjct 440987 ATCTG-CTGTACACG-CGACTCCTCGGGCTTGTGCACCAGGTGGCGGAACATGAGGCACG 440930 Query 868989 CAAAGTCGCAGTGCA-ACCCT 869008 ||||||||||||||| ||||| Sbjct 440929 CAAAGTCGCAGTGCAGACCCT 440909 Score = 86.0 bits (94), Expect = 8e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| || || || | || ||| || | ||||||||||||||| || |||||||| Sbjct 439827 TCGTCACGGCTAATGAGCTCATTGGAGAATGTGAGGCCGGGCATGAGACCACGCTTCTTC 439768 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||| | || ||||| || |||||||||||||| || |||||| Sbjct 439767 AGCCAGAAGATGGAGGCAAACGACCCCGAAAAGAAGATGCCCTCGACAGCAGCAAAG 439711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100071379176625