Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq33263 104 4e-16 seq1427 102 1e-15 seq17 95.1 2e-13 seq175 87.8 3e-11 >seq33263 Length=1786 Score = 104 bits (114), Expect = 4e-16 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||| |||||||| ||||||||| || || || | |||||||| ||||||||| Sbjct 208 GCCGCTAACTACCTGGACATCAAGGGTCTTCTGGACGTCACCTGCAAGACTGTGGCCAAC 149 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||| | || ||||| ||||||||||| || ||||||||| ||| Sbjct 148 ATGATCAAGGGCAAGACTCCAGAGGAGATCCGCAAGACGTTCAACATCAAGAACG 94 >seq1427 Length=60525 Score = 102 bits (112), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| ||||||||||||| || || | || ||||| |||||||||||||||| ||| Sbjct 37562 AGCGGCTCAAGGGCAAGGAAGGTCGCGTGCGAGGCAACCTCATGGGCAAGCGCGTCGACT 37621 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | |||||||| | ||||||| ||||||||| | || ||| ||| |||| ||||||| Sbjct 37622 TCTCGGCGCGCACGGTCATCACGCCCGACCCCAACCTCTCCATCGACCAGGTCGGCGTGC 37681 Query 429181 CCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCTT 429229 | |||| | | | ||||| |||||| ||| |||||||| Sbjct 37682 CGCGCTCCATCGCCGCCAACATGACCTTCCCCGAGATCGTCACGCCCTT 37730 Score = 87.8 bits (96), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 429653 CGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCA 429712 ||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 39641 CGTGACGACGCCGTACAACGCGGACTTTGACGGCGACGAGATGAACCTGCACCTGCCCCA 39700 Query 429713 GTCGGAGATGGCACGCGCCGA 429733 |||| | | | |||||||| Sbjct 39701 GTCGCTGGAGACTCGCGCCGA 39721 >seq17 Length=5228726 Score = 95.1 bits (104), Expect = 2e-13 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 653675 CGCCACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGACCGAGGAAATGCCGTGGTCG 653734 |||||||| || ||||||| | || || | || | |||||||| ||||||| || Sbjct 3053824 CGCCACGGCCAGAAGGGCATCTTGAGCCGGCTGTGGCGCACCGAGGATATGCCGT--TCA 3053767 Query 653735 CCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATG 653794 || | || ||| |||||||||||| | |||||||||||| |||||||||||||| Sbjct 3053766 GCGAG-GGCGGCATGACGCCCGACATCCTGTTCAACCCGCACGGATTCCCGTCGCGCATG 3053708 Query 653795 ACCATGGGCAAGATGATGGAG 653815 ||||| |||| | |||| ||| Sbjct 3053707 ACCATCGGCATGCTGATCGAG 3053687 >seq175 Length=1232269 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 |||||||||| ||| ||||||||||| || ||| |||| ||||||||||| || || Sbjct 438828 GGGTCCTTGATGTACGTGTCGATGAGAAGGCTGTACATCTCCGAGTGGATGTTCTCCATT 438769 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 ||||| ||||||||||| ||||| Sbjct 438768 GCGATTTGGAAGCCATAGAAGCA 438746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907084890933875