Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1985 104 2e-17 seq81637 95.1 9e-15 seq8098 95.1 9e-15 >seq1985 Length=32442 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| || || |||| || || || || || || || ||||| || || || Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCG 32365 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||| ||||| || | |||| | || || || || ||| Sbjct 32364 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 32305 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | ||| |||||| | || | |||||||| || || Sbjct 32304 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACC 32245 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || || ||||| || | || || || || ||||||||||| Sbjct 32244 TCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTT 32195 >seq81637 Length=1039 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || || || || ||||| ||||| || || || | || ||| | Sbjct 614 CGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCA 673 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | |||| | || || || || ||||| ||||||||| Sbjct 674 TCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTG 733 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | |||||| | || | |||||||| || || || ||||| || Sbjct 734 TCCTG-AATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGAT 792 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | || || || || |||||||| Sbjct 793 GGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 >seq8098 Length=4112 Score = 95.1 bits (104), Expect = 9e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| || || |||| || || || || || || || ||||| || || || Sbjct 186 CCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCG 127 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||| ||||| || | |||| || ||||| || || ||| Sbjct 126 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 67 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGA 29729 || ||||||||||| || ||| |||| |||||| | || | |||||||| Sbjct 66 ATGCCCTCTTTGTCCTG-AATCTTTGCCTTGACATTCTCGATGGTGTCAGA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384814855268625