Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1985 154 3e-32 seq20 143 5e-29 seq81637 140 6e-28 seq8098 100 6e-16 >seq1985 Length=32442 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| || || || | |||||||||||| || ||||| || || || || | Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCG 32365 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| ||||| || || || ||||| || | ||||| ||||| || Sbjct 32364 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 32305 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || |||||||| || ||||| |||||||| ||| | || || Sbjct 32304 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACC 32245 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || |||||||| |||| ||||| || || ||||||||| Sbjct 32244 TCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 32197 >seq20 Length=4946952 Score = 143 bits (158), Expect = 5e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || ||||||||||| || || || || || || | | || Sbjct 2722197 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 2722256 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || |||||||||| || || || ||||| || |||||||| Sbjct 2722257 ATCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTT 2722316 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| || || || || || || || ||| | || || || |||| || || Sbjct 2722317 ATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGAT 2722376 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 |||||||| |||| ||||| || || |||||||| |||| || Sbjct 2722377 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGATTAAAT 2722420 >seq81637 Length=1039 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||||||||||| || ||||| || || || || || || | | ||| Sbjct 158 CGGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCA 217 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || || ||||| | || || || ||||| || || || ||||| Sbjct 218 TCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTG 277 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| |||||||| ||| | || || |||| || || Sbjct 278 TCCTGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATG 337 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 338 GTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 372 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | ||||||||||| || || || || || || || | Sbjct 374 CCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCG 433 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||| || || || | || || ||||| || Sbjct 434 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGG 493 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || || |||||||| || || || || || ||| | || || Sbjct 494 ATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACC 553 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 554 TCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || | || || ||||| || || || || || || || |||||| Sbjct 2 TTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATCCCCTCTTTGTCCTGGATCTTT 61 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || |||||||| ||| | || || |||| ||| || |||||||| ||| Sbjct 62 GCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTC 121 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 122 AGCGTCTTCACGAAGATCTGCAT 144 >seq8098 Length=4112 Score = 100 bits (110), Expect = 6e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| || || || | ||| || ||||| || ||||| || || || || | Sbjct 186 CCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCG 127 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| ||||| || || || ||||| || || || || ||||| || Sbjct 126 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 67 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 || || || || || ||||||||||| || ||||| || || || ||| Sbjct 66 ATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTCTCGATGGTGTCA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980743776696375