Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq20 147 2e-30 seq8098 131 2e-25 seq81637 123 2e-23 seq2491 95.1 1e-14 >seq20 Length=4946952 Score = 147 bits (162), Expect = 2e-30 Identities = 154/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| ||| || |||| | | | || || |||||||||| Sbjct 2722215 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCTTCCAGCTGCTTGC 2722273 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||||||||| ||||||||||| || |||||| || Sbjct 2722274 CTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 2722333 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | |||||||| || | ||||| ||| ||||| ||||| | Sbjct 2722334 TCACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGG 2722393 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 2722394 TCTTCACGAAGATCTGCATG 2722413 >seq8098 Length=4112 Score = 131 bits (144), Expect = 2e-25 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| || ||||| || || || ||||| || | | |||| ||| | || || |||| Sbjct 391 ATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCA-TCTTCCAGCT 333 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | |||||||||||| || ||||| || |||||||| ||||| Sbjct 332 GCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCT 273 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| | | |||||| || | |||| ||| ||||| | Sbjct 272 TCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTCTTGCCCG 213 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||| || || || || ||||||||| || Sbjct 212 TCAGCGTCTTGACAAAGATCTGCATGCCT 184 >seq81637 Length=1039 Score = 123 bits (136), Expect = 2e-23 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||| || | | |||| ||| | || || ||||||||||| Sbjct 404 GTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCA-TCTTCAAGCTGCTTGCC 462 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| |||| |||||||||||||| || ||||| || |||||||| ||| |||||| | Sbjct 463 AGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGAT-TTTTGCTT 521 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | | ||| || || | |||| ||| ||||| ||||||| Sbjct 522 TCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGAG 581 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 582 TCTTCACGAAGATCTGCAT 600 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || ||| |||| ||| | || || | ||||||| Sbjct 859 GGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCA-TCTTCCAATTGCTTGC 917 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| |||||||||||||| || ||||| || |||||||| ||||| | Sbjct 918 CGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCTT 977 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | | |||||| || | |||| ||| ||||| ||||||| Sbjct 978 TCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGAG 1037 Query 133642 TT 133643 || Sbjct 1038 TT 1039 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| || || || ||||| || ||| ||| ||| | || || |||||||||| Sbjct 631 GGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCA-TCTTCCAGCTGCTTGC 689 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||| ||||| || || || || || ||||| ||||| || Sbjct 690 CGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCCT 749 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| | || |||||| || | |||| ||| ||||| ||||| | Sbjct 750 TGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGCG 809 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 810 TCTTCACGAAGATCTGCATGCCT 832 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | ||||||||||||||||| || ||||| || || ||||| |||||| Sbjct 1 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATCCCCTCTTTGTCCTGGATCTT 60 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | || | | ||||| |||||| | | ||| || || | |||| ||| |||||||| Sbjct 61 TGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCGGT 120 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 121 CAGCGTCTTCACGAAGATCTGCAT 144 Score = 105 bits (116), Expect = 6e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | || ||| | || || ||||||||||| Sbjct 176 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCA-TCTTCCAGCTGCTTGCC 234 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || ||||| || |||||||| ||||| ||| Sbjct 235 GGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCCTT 294 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | ||| || || | |||| ||| ||||| ||||| || Sbjct 295 GACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGCGT 354 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 355 CTTGACAAAGATCTGCATGCCT 376 >seq2491 Length=20969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| | | | ||| ||| | ||||| ||||| ||| Sbjct 10675 GTGGACTCCTTCTGAATGTTGTAGTGGGAGAGGGTGCGACCA-TCCTCCAGCTGTCTGCT 10617 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||||| || |||| |||||||| ||||| || ||||||| || |||| | ||| Sbjct 10616 GGCGTAGATCAGCCTCTGCTGGTTCGGAGGAATCCCTTCCTGCTCCTGGATCATCGTCTT 10557 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| ||||| ||||||||||| || | || || ||| || ||| || || Sbjct 10556 CAAGTTCTCCGTGGTGTCTGTGGGCTCCACTTCAAGGGCGATGGTCTTCCCGCTCGCTGT 10497 Query 133643 TTTTACGAAAATCTGCATGGCTTAT 133667 ||||||| |||||||| ||||| Sbjct 10496 CCTTACGAAGATCTGCAT--CTTAT 10474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482900367295000