Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq8098 131 2e-25 seq81637 114 1e-20 seq20 111 1e-19 >seq8098 Length=4112 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | | || || |||| ||||| ||| ||||||||| |||||||| || || Sbjct 414 CCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCG 355 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || ||||||||||||||||| | || Sbjct 354 AGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGG 295 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | |||||| | |||||| Sbjct 294 ATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACC 235 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || ||||||| || || ||||| |||||||| Sbjct 234 TCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 >seq81637 Length=1039 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | ||| ||||||||| |||||||| || || | || || | || || Sbjct 392 ACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCTTCA 451 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || |||| |||||||||||| | || | | |||||||||| | Sbjct 452 AGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 511 Query 35648 ATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 || |||||| |||| | | | ||||| | || ||||||| |||||| || || Sbjct 512 AT-TTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTT 570 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||| ||||| || |||||||| Sbjct 571 GCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || || || Sbjct 181 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATCTTCCAGCTGCTTGCCGGCGAA 240 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | | |||||||||| ||||| ||| | | | Sbjct 241 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 300 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | || ||||||| |||||| || || ||||||| || || || Sbjct 301 CTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGAC 360 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 361 AAAGATCTGCAT 372 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || |||| || || | || ||||||||||| || || || Sbjct 637 CTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAA 696 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||| ||||| | |||| | ||| |||||| ||||| ||| | | | Sbjct 697 GATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCCTTGACATT 756 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 757 CTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCAC 816 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 817 GAAGATCTGCAT 828 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| || || | || |||| ||||| || || || Sbjct 865 CTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAA 924 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||||||| | || | | |||||||||| ||||| |||| | Sbjct 925 AATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTT 984 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | |||||| | |||||||||| |||||| || || ||||||| |||| Sbjct 985 CTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGAGTT 1039 >seq20 Length=4946952 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || || || | || ||||||||||| || || || Sbjct 2722222 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2722281 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||||| || ||||| ||| |||||| ||||| | Sbjct 2722282 ATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 2722341 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 2722342 TCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 2722401 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2722402 AAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450308292515000