Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1985 116 4e-21 seq81637 107 2e-18 seq8098 104 2e-17 seq20 95.1 1e-14 >seq1985 Length=32442 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | || ||||| || || || ||||| || ||||||||||| | Sbjct 32424 CCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCG 32365 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || || ||||| || || |||| ||||| || || || || Sbjct 32364 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 32305 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| || | ||||| || | ||||| Sbjct 32304 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACC 32245 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 || ||||| ||||| || || || | ||| || ||||| || |||||||||| Sbjct 32244 TCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTTGT 32193 >seq81637 Length=1039 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | || || || || || || |||||||| ||||||||||| | Sbjct 374 CCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCG 433 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| || ||||||| |||||||| || || || Sbjct 434 AGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGG 493 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || |||||| ||| || || | ||||| || | || || Sbjct 494 ATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACC 553 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||| || ||||| || ||||| Sbjct 554 TCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| || || | || ||||| || || || |||||||| ||||||||||| ||| Sbjct 602 CCACCTCGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCC 661 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | || || || || ||||| ||||| || || |||| ||||| || || || || Sbjct 662 AGC-GTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGG 720 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || ||||| || ||||| || | ||||| || | ||||| Sbjct 721 AATCCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCAC 780 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | || || ||||| || ||||| Sbjct 781 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| || || | || ||||| || || || ||||| || ||||||||||| ||| Sbjct 830 CCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 889 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| || || || | || ||||| || ||||||| |||||||| || || || Sbjct 890 AGC-GTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGG 948 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || ||||| || ||| || || | ||||| || | ||||| Sbjct 949 GATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCAC 1008 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || || ||||| || || || | |||| Sbjct 1009 CTCCAGCGTGATGGTCTTGCCCGTCAGAGTT 1039 >seq8098 Length=4112 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || ||||| || || |||||||| ||||||||||| | Sbjct 414 CCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCG 355 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| || || ||||| |||||||| || || || Sbjct 354 AGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGG 295 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| || | ||||| || | ||||| Sbjct 294 ATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACC 235 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | || || || || || ||||| Sbjct 234 TCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | || ||||| || || || ||||| || ||||||||||| | Sbjct 186 CCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCG 127 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || || ||||| || || |||| | |||||| || || || Sbjct 126 AGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 67 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||||| ||||| || ||||| ||| ||||| Sbjct 66 ATGCCCTCTTTGTCCTGAATCTTTGCCTTGAC 35 >seq20 Length=4946952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || ||||| || |||||||| || || |||||||||||| Sbjct 2722186 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 2722245 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| |||||||| || || | |||||||| ||||| || Sbjct 2722246 AGCGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGA 2722305 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 2722306 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACC 2722365 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 2722366 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504854307035000