Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq520 100 2e-16 seq53 89.7 4e-13 seq175 86.0 5e-12 >seq520 Length=307154 Score = 100 bits (110), Expect = 2e-16 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 77333 TTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGACAACTGACCCTCCGCCATGCAGC 77392 || || | ||| ||| || ||| || |||||||| || || | ||| || | |||| Sbjct 293145 TTCAGCTTGTCAAGCCTCTCAAAATCTTCCTTGTTCACCACCGGCCCCCCTTGCT-CAGC 293203 Query 77393 CTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATG 77452 |||||| |||| |||||||||||| |||||||| || | || |||||||||||| || Sbjct 293204 ACCCAGCCCTTCTTCTTCCAGTTCTTCACCCACTTGGTGATGCCGTTGATGGTGAACTTG 293263 Query 77453 CTGTCTGTGTAGACGACCAGCTTCT 77477 ||||| ||||| | || ||||||| Sbjct 293264 CTGTCCGTGTACAGCACAAGCTTCT 293288 >seq53 Length=3035741 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 41095 ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154 |||| || |||||||| || |||| || |||| | |||| ||||||| ||||| || | Sbjct 2983000 ATGGAGAGCTGTCATGCCAGCTGTACCAGCGATCGGCTGACCTGGGACTTGGGGTGCCCT 2982941 Query 41155 TTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| || || || || |||||||| || |||||||||||| Sbjct 2982940 TCAACATCGCCAGCTACGCACTGCTCACCTACATGATTGCACAC 2982897 >seq175 Length=1232269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || | |||| |||||||| || ||||| || ||||| || || || || Sbjct 438719 CAGGAAGTGCAGATCACAGAGGCACGATGCTTCTATGGCTTCCAAATCGCAATGGAGAAC 438778 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || ||||| |||||||| ||||| || || ||||||||||| || Sbjct 438779 ATCCACTCGGAGATGTACAGCCTTCTCATCGACACGTACATCAAGGA 438825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397038810930625