Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq81637 111 1e-19 seq1985 98.7 8e-16 seq8098 96.9 3e-15 seq20 91.5 1e-13 >seq81637 Length=1039 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || ||| | |||| ||| | ||||| || ||||| || |||||||| Sbjct 372 TGCCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCG 431 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||| ||||| || || ||| |||| || ||||| || || || | Sbjct 432 CGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGG 491 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || ||||| | | || | ||||| | || |||| Sbjct 492 GGATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAA 551 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||||||| ||||| ||||| ||||| Sbjct 552 CCTCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || ||| | |||| || | ||||| || || || || |||||||| Sbjct 828 TGCCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 887 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | ||||| | || || |||||| |||| || ||||| || || || | Sbjct 888 CCAGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGG 947 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| ||||| | | || | ||||| | || || | Sbjct 948 GGATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCA 1007 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | || || || || | ||||||||||||||| Sbjct 1008 CCTCCAGCGTGATGGTCTTGCCCGTCAGAGTT 1039 >seq1985 Length=32442 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || ||| | |||| || | ||||| || || || || |||||||| Sbjct 32426 TGCCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTG 32367 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||| || || || |||||| | || || |||||||| || || | Sbjct 32366 CGAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGG 32307 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| || | | || | ||||| | ||| || | Sbjct 32306 GAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCA 32247 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | |||||||||||||| ||||| ||||| ||||| Sbjct 32246 CCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 32198 >seq8098 Length=4112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | || ||||| |||| ||||| ||||| || ||||| || |||||||| Sbjct 415 GCCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGC 356 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||| ||||| || |||||| | || | ||||| || || || || Sbjct 355 GAGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGG 296 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| || | | || | ||||| | || || || Sbjct 295 GATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCAC 236 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||||||||| || || |||||||| ||||| Sbjct 235 CTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 >seq20 Length=4946952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || || ||||||||| || |||| | Sbjct 2722198 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 2722257 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || ||| | || || ||||| || || || || | || || ||| Sbjct 2722258 TCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTA 2722317 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | | || | ||||| | | || || || || || || Sbjct 2722318 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATG 2722377 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||||||||| || ||||| ||||| ||||| Sbjct 2722378 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424488368271000