Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq81637 188 8e-43 seq8098 185 1e-41 seq20 167 3e-36 seq1985 165 9e-36 seq291 87.8 2e-12 >seq81637 Length=1039 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || || || ||||||||| || | Sbjct 372 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 313 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || ||||||||||||||||| || || ||||||||| Sbjct 312 GACACGATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAG 253 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || ||||| || || |||| ||||||||| ||||||| || Sbjct 252 CAGAGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGACTACAAC 193 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| ||||| || | || ||||| ||||| Sbjct 192 ATCCAGAAGGAGTCTACTCTGCATCTCGTTCTCCGGCTTCGAGGTGG 146 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || ||||| ||||| ||| | | Sbjct 828 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCT 769 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 768 GACACCATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAA 709 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| |||||| || |||||||| || Sbjct 708 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACGCTGGCAGACTACAAC 649 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || || ||| | || ||||| ||||| Sbjct 648 ATCCAAAAGGAGTCTACCCTCCACCTGGTCCTCCGGCTTCGAGGTGG 602 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| || | Sbjct 600 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 541 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || ||||| |||||||||||||| || || ||||||||| Sbjct 540 GACACCATCGAGAACGTGAAAGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 481 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| || || |||| ||| || || || ||||| || Sbjct 480 CAGCGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCGCGGACTACAAC 421 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||||||||| || ||||| ||||| ||| | || || Sbjct 420 ATCCAAAAGGAGTCTACTCTGCATCTGGTCCTTCGGCT 383 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27424 ACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTG 27483 || || || |||||||| || || || ||||| ||| || ||| | |||| || || Sbjct 1038 ACTCTGACGGGCAAGACCATCACGCTGGAGGTGGAGGCATCTGACACGATTGAGAACGTG 979 Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 || || || ||||||||||||||||| || || |||||||||||||| || ||||| || Sbjct 978 AAAGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAGCAGCGGCTGATTTTCGCC 919 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||| | || |||| ||| || || |||||||| || |||| ||||| || || Sbjct 918 GGCAAGCAATTGGAAGATGGTCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCTACC 859 Query 27604 CTTCATCTAGT 27614 || || || || Sbjct 858 CTCCACCTGGT 848 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || ||||| ||||||||| || | Sbjct 144 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACTCTGGAGGTTGAGGCATCT 85 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| || || || |||||||| ||||| || || ||||||||| Sbjct 84 GACACGATTGAGAACGTGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCCCCAGACCAG 25 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || || || || ||| Sbjct 24 CAGCGGCTCATCTTCGCCGGCAAG 1 >seq8098 Length=4112 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| ||||| ||| || | Sbjct 188 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCATCT 247 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || || |||||||||||||| || || ||||||||| Sbjct 248 GACACGATTGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 307 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || || |||| ||| || || |||||||| || Sbjct 308 CAGCGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACGCTCGCAGACTACAAC 367 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||||| || |||| || | ||||| Sbjct 368 ATCCAAAAGGAGTCTACTCTACATCTGGTTCTGCGGCTGAGGGGTGG 414 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 || ||||||||| || ||| | ||| | ||| | ||||| || ||||||||||| ||| Sbjct 2 CTGGAGGTTGAGGCATCTGACACCATCGAGAATGTCAAGGCAAAGATTCAGGACAAAGAG 61 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| |||||||||||| | || || || || || |||||||| || |||| ||| Sbjct 62 GGCATTCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGC 121 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || || |||||||| || |||| ||||| || || || || || ||| | || || Sbjct 122 ACGCTCGCAGACTACAACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTTCGGCT 177 >seq20 Length=4946952 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| || Sbjct 2722415 ATCATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCA 2722356 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| | ||| | || ||||||| || || ||||| ||||| || |||||||| ||| Sbjct 2722355 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGAC 2722296 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| ||||| || || || ||||| || || |||| || || || | ||||| Sbjct 2722295 CAGCAGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTAC 2722236 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || |||||||| || || || ||| ||||||| || ||||| Sbjct 2722235 AACATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGG 2722186 >seq1985 Length=32442 Score = 165 bits (182), Expect = 9e-36 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || ||||| ||||| ||| | Sbjct 32197 AATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCCTC 32256 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | ||||| || || |||||||||||||| ||||| |||||||| Sbjct 32257 TGACACGATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 32316 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || || || || || |||||||| || |||| ||| || || |||||||| || Sbjct 32317 ACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTACAA 32376 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| || ||||| || || ||| | || || Sbjct 32377 CATCCAGAAGGAGTCTACTCTGCACCTGGTCCTTCGGCT 32415 >seq291 Length=695248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCC- 32183 ||||| ||||||| || || ||||| || || || ||| ||||| | || |||| Sbjct 450894 ACCATCATCAACCTGGCGCAAAACTTCGTGGGCAGCAACAACGTGAACCTGCTGCAGCCC 450835 Query 32184 ATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||| || ||||| || || || ||| |||||||||||| || || ||| |||||||||| Sbjct 450834 ATCGGG-CAGTTCGGCACTCGTCTCCACGGTGGCAAGGACGCCGCCAGCCCCCGTTACAT 450776 Query 32244 CTTCACC 32250 ||||||| Sbjct 450775 CTTCACC 450769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569696425210000