Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq53 138 9e-28 seq44565 82.4 6e-11 seq560 82.4 6e-11 >seq53 Length=3035741 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 2982886 AGACCAGTGATGTGTGCAATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGC 2982945 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| || |||| ||| |||| | |||||| ||||| || || |||||||| || Sbjct 2982946 ACCCCAAGTCCCAGGTCAGCCGATCGCTGGTACAGCTGGCATGACAGCTCTCCATCCGCG 2983005 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| || || |||| |||||||| ||||| || |||||||| Sbjct 2983006 ACGTAGAATTGGCACAGTGCGTGGCATGGAGGCAGCGCCATGAG 2983049 Score = 129 bits (142), Expect = 5e-25 Identities = 132/171 (77%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||| || || ||||| || | ||||||||| ||||| || || |||||||| Sbjct 2983581 CATGTCGGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGACCCAGGTC 2983640 Query 30283 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339 |||||| || | |||| ||||||| | ||||| ||| | | || |||||||| Sbjct 2983641 TCCCTCCTC---GCGCTCGGGGAAGCCCTGCCGGTCCAGGAAGGCCCGCGAGCCGTTGGC 2983697 Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||||||| || ||||| | |||||||| |||| || |||||||| Sbjct 2983698 GTCCCAGATCTTGACGCCCTTGGCGGAGAGCTCCTTGGCATTGGTGGACCC 2983748 >seq44565 Length=1514 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||||| || ||||| | |||||| | | | | || || | || ||||||||| Sbjct 927 TTCAGCTCCCGACTCAGGACGATGTTTATGCGATTTTTGAGCGGACGTTTTTTTTCGGGG 868 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || || ||||| ||||| | ||||| ||||||||||||||||| ||| Sbjct 867 ATTGAAAACCACGTCTTGCGTCCCATGATCACCACGTTCTGCTTTCCT 820 >seq560 Length=281508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||||| || ||||| | |||||| | | | | || || | || ||||||||| Sbjct 20550 TTCAGCTCCCGACTCAGGACGATGTTTATGCGATTTTTGAGCGGACGCTTTTTTTCGGGG 20491 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || || ||||| ||||| | ||||| ||||||||||||||||| ||| Sbjct 20490 ATTGAAAACCACGTCTTGCGTCCCATGATCACCACGTTCTGCTTTCCT 20443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405883916923500