Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8098 104 1e-17 seq1985 102 5e-17 seq81637 86.0 4e-12 >seq8098 Length=4112 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || || || |||| |||| ||| ||||| ||||||||| ||||| || |||| Sbjct 416 CGCCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTG 357 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | ||||| || || || ||||| || || || ||||| ||||| || | Sbjct 356 CGAGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGG 297 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || || | ||| ||||| |||| Sbjct 296 GGATCCCCTCCTTGTCCTGGATC-TTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCC 238 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || || || || || || | ||| || ||||| ||||||||| Sbjct 237 ACCTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 187 >seq1985 Length=32442 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || ||||| |||||| || ||||| || |||| Sbjct 32425 GCCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 32366 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| ||||| || ||||| || || | ||||||||||| || || Sbjct 32365 GAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGG 32306 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| |||| || || | ||| ||||| | ||||| Sbjct 32305 AATGCCCTCCTTGTCCTGGATC-TTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCA 32247 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | |||| || || || || || || | || ||||| || |||||||| ||| Sbjct 32246 CCTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTTG 32194 >seq81637 Length=1039 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || || | |||| ||| ||||| ||||||||| ||||| || || | Sbjct 373 GCCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGC 432 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | |||||||| || || || || || || | ||||| ||||| || || Sbjct 433 GAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGG 492 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||||| ||| ||| | || ||||| ||| | Sbjct 493 GATCCCCTCCTTGTCCTGGAT-TTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAA 551 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || || | || ||||| || |||||||| Sbjct 552 CCTCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||| ||||| || ||||||||| ||||| || |||| Sbjct 602 CCACCTCGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCC 661 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || ||||| || || | ||||||||||| || || Sbjct 662 AGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 721 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| ||| || | || || | || ||||| | |||||| Sbjct 722 ATCCCCTCTTTGTC-CTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCAC 780 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || | ||| ||||| || ||||||||| Sbjct 781 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 829 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | || | ||| ||||| |||||| || ||||| || ||||| Sbjct 146 CCACCTCGAAGCCGGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 205 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || ||||| || || || | ||| ||||| || || Sbjct 206 AGGGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 265 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || || | ||| ||||| ||| || Sbjct 266 ATCCCCTCCTTGTC-CTGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAAC 324 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || | ||| || ||||| ||||||||| Sbjct 325 CTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314399244567125