Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1985 199 9e-46 seq81637 194 4e-44 seq20 187 6e-42 seq8098 167 5e-36 seq2491 107 4e-18 seq65151 86.0 1e-11 seq27453 86.0 1e-11 seq14095 86.0 1e-11 >seq1985 Length=32442 Score = 199 bits (220), Expect = 9e-46 Identities = 173/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || || || || | |||||| Sbjct 32409 AGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 32350 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| |||||||| ||||| |||||||| || |||| || ||||||||| Sbjct 32349 TCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 32290 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || || ||||||||| || ||||| |||||||| ||| Sbjct 32289 TGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTC 32230 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| || || | ||||||||| Sbjct 32229 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTT 32195 >seq81637 Length=1039 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| ||||| ||||||||||| || ||||| || || | |||||| Sbjct 389 AGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCT 448 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || || || || ||||| || || | || ||||||||| Sbjct 449 TCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 508 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| ||||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 509 TGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTC 568 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || || | |||||| Sbjct 569 TTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 187 bits (206), Expect = 6e-42 Identities = 174/221 (79%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||| || || ||||| ||||||||||| || || || || || Sbjct 608 CGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTA 667 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||||||||||||| |||||||| ||||| |||||||| || |||| || Sbjct 668 CGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCC 727 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| ||||| || || || ||||||||||||||| || ||||| ||| Sbjct 728 TCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGA 787 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | |||||| Sbjct 788 GTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || || ||||| ||||| || |||||||| || || | ||||| Sbjct 152 CGAAGCCGGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTA 211 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||||||||||||| |||||||| | | || ||||| || || | || Sbjct 212 CGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCC 271 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || || || |||||||| |||||||| || Sbjct 272 TCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGC 331 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 332 GTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 372 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || || | |||||| Sbjct 845 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCT 904 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| ||||| || || || || ||||| || || | || ||||||||| Sbjct 905 TCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 964 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||||||| || || |||||||| || ||||| || ||||| ||| Sbjct 965 TGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTC 1024 Query 211083 TTTCCCGTGAGAGT 211096 || ||||| ||||| Sbjct 1025 TTGCCCGTCAGAGT 1038 Score = 120 bits (132), Expect = 7e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| |||||||| || || || ||||| || || | || || |||||||||||||| Sbjct 1 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATCCCCTCTTTGTCCTGGATCTT 60 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||||||||| || || |||||||| |||||||| |||||||| ||||| || || Sbjct 61 TGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCGGT 120 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 121 CAGCGTCTTCACGAAGATCTGCAT 144 >seq20 Length=4946952 Score = 187 bits (206), Expect = 6e-42 Identities = 171/215 (80%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 2722201 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 2722260 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || || || ||||| ||||||| |||||||| ||| Sbjct 2722261 TCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 2722320 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| |||||||| |||||||||||| ||| || ||||| || ||||| Sbjct 2722321 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCA---CTTGGCTCCACCTCCAGGGTGATG 2722377 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 2722378 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 >seq8098 Length=4112 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| ||||||||||| || || || || || | |||||| Sbjct 399 AGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 340 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || ||||| || || | || ||||||||| Sbjct 339 TCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 280 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || |||||||| || ||||| |||||||| ||| Sbjct 279 TGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTC 220 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 219 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 Score = 131 bits (144), Expect = 4e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || || || || | |||||| Sbjct 171 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 112 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| |||||||| || | || ||||| || |||| || || |||||| Sbjct 111 TCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC 52 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||||| || || || |||||||||||||| |||||||| || Sbjct 51 TGAATCTTTGCCTTGACATTCTCGATGGTGTCAGATGCCTCAACCTCCAG 2 >seq2491 Length=20969 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210898 GTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTC 210957 |||| |||| ||||| ||||||||||| || || ||||| || | | ||||| | | Sbjct 10695 GTCTGGGGACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTGGGAGAGGGTGCGAC 10636 Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 |||| |||||||| ||| ||| |||| || | || |||| ||||||| ||||||| Sbjct 10635 CATCCTCCAGCTGTCTGCTGGCGTAGATCAGCCTCTGCTGGTTCGGAGGAATCCCTTCCT 10576 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 ||||||||| | |||| ||| || ||||||| | | || || || || | || Sbjct 10575 GCTCCTGGATCATCGTCTTCAAGTTCTCCGTGGTGTCTGTGGGCTCCACTTCAAGGGCGA 10516 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 | ||||| || | ||| |||| || | |||||| |||| Sbjct 10515 TGGTCTTCCCGCTCGCTGTCCTTACGAAGATCTGCATCTTAT 10474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 |||| ||||||||| | || || ||||| || || | || || | |||||||||||| Sbjct 11506 AGGTACAGAGTGGACCCCTTCTGAATGTTGTAGTCGGTGAGAGTGCGACCATCTTCCAGC 11447 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 | ||| |||||| | || | || || || ||||||| || |||| ||||||||| Sbjct 11446 CGTCTGCATGCGAATGTCAGACTCTGCTGTTCTGGAGGAATCCCCTCCTGCTCCTGGATC 11387 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 | | |||| ||| || ||||||| | | || || || || | ||| ||||| || Sbjct 11386 GTCTCCTTCAGGTTCTCCGTGGTGTCCGTGGGCTCCACTTCAAGGGCGATGGTCTTCCCG 11327 Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTTA 211118 | | ||| | || || | |||||| ||| Sbjct 11326 CTCACTGTCCTCACGAAGATCTGCATCTTA 11297 >seq65151 Length=1204 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 210898 GTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTC 210957 |||| | || ||||| ||||||||| | | ||||| || | | | ||| | | Sbjct 722 GTCTGACAACCAGGTGCAGAGTGGACCCCGGCAGAATGTTGTAGTGGGAGACGGTGCGAC 663 Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 |||| ||||||| ||| ||| |||| || | ||| ||||| ||||||| || |||| Sbjct 662 CATCCTCCAGCTCTCTGCTGGCGTAGATCAGCCTTTGCTGGTCCGGAGGAATCCCCTCCT 603 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC--AGAGCTTTCAACCTCGAGAGT 211075 |||||||||||||| |||| ||| || ||||||| |||| | || || || | Sbjct 602 TGTCCTGGATCTTTGCCTTCAGGTTCTCCGTGGTGTCCATGAGC--TGCACTTCAAGGCT 545 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||| ||||| || | ||| | || || | |||||| ||| Sbjct 544 GATGGTCTTGCCACTCGCTGTCCTCACGAAGATCTGCATCTTA 502 >seq27453 Length=1983 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| || ||||| || ||| ||||||| ||| ||| ||| || ||| Sbjct 1179 CCCTCCTTGTCATGAATCTTCCCCTTGACGACATCGATGGCGTCCGAGGCTTCGACGTCG 1238 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||||||||| |||||||| ||||| ||||| | |||||| || Sbjct 1239 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 1285 >seq14095 Length=2887 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| || ||||| || ||| ||||||| ||| ||| ||| || ||| Sbjct 1166 CCCTCCTTGTCGTGAATCTTCCCCTTGACGACATCGATGGCGTCCGAGGCTTCGACGTCG 1107 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||||||||| |||||||| ||||| ||||| | |||||| || Sbjct 1106 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157872902935625