Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq8098 102 7e-17 seq81637 98.7 9e-16 >seq8098 Length=4112 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| |||||| || ||| ||||| || || || || || || || || | || || Sbjct 396 ACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCC 337 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || | ||||||||||| | ||| | | ||| |||||| | Sbjct 336 AGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 277 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| |||| || | | ||| || | |||||| |||| ||||| | || Sbjct 276 ATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTCTTG 217 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||||||| || |||||||| ||||| Sbjct 216 CCCGTCAGCGTCTTGACAAAGATCTGCAT 188 >seq81637 Length=1039 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | |||| ||| || || ||| ||||| || || || || Sbjct 370 CATGCCTCCCCTCAGCCGAAGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTC 429 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || |||||||| ||||| || || || || ||||||||||| | Sbjct 430 CGCGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGG 489 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | | ||| |||||| |||||| ||| | || | | || || | ||| Sbjct 490 GGGGATCCCCTCCTTGTCCTGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTC 549 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||| |||||| | || |||||||| || || || ||||| |||||| Sbjct 550 AACCTCCAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429094728132125