Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq20 170 5e-37 seq1985 158 3e-33 seq81637 156 1e-32 seq8098 123 6e-23 seq362 91.5 4e-13 >seq20 Length=4946952 Score = 170 bits (188), Expect = 5e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||||||||||| |||| ||||| |||| || || Sbjct 2722191 ACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGT 2722250 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| ||||| || |||||||| ||||| || Sbjct 2722251 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCC 2722310 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| |||||| ||||||||||| | ||||| || | Sbjct 2722311 TTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAG 2722370 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | ||||| Sbjct 2722371 GGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 >seq1985 Length=32442 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| || || || |||| ||||| || || | || | |||||| Sbjct 32409 AGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 32350 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || |||||||| || ||||| || |||||||| Sbjct 32349 TCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 32290 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || || ||||| |||| ||||| || | ||||| ||| Sbjct 32289 TGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTC 32230 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||| ||| || | ||| | |||||||| Sbjct 32229 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTT 32195 >seq81637 Length=1039 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| |||||||| || || || ||||||| ||||| || |||| || Sbjct 608 CGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTA 667 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || |||||||| || || |||||||| || ||||| || Sbjct 668 CGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCC 727 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| || ||||| ||| ||| ||||||||||| |||| ||||| || | Sbjct 728 TCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGA 787 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || || | ||| | ||||| Sbjct 788 GTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 147 bits (162), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || ||||| || || ||||||| ||||| || || | || | |||||| Sbjct 389 AGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCT 448 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || ||||| || || || || |||||||| Sbjct 449 TCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 508 Query 225622 TGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| |||||||| ||| ||||||||||| || | || || || | |||||| || Sbjct 509 TGGAT-TTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGT 567 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| ||| || | ||| | ||||| Sbjct 568 CTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || |||| || | |||||| Sbjct 845 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCT 904 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || ||||| || || || || ||||| || || || || |||||||| Sbjct 905 TCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 964 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| || || ||||| || | ||||| || | |||||| ||| Sbjct 965 TGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTC 1024 Query 225682 TTGCCCGTCAAAGTT 225696 |||||||||| |||| Sbjct 1025 TTGCCCGTCAGAGTT 1039 Score = 107 bits (118), Expect = 5e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || || ||||| || || || |||| ||||| || | | || Sbjct 152 CGAAGCCGGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTA 211 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || |||||||| | | || ||||| || || || || Sbjct 212 CGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCC 271 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| || || ||||| || | || || || | | Sbjct 272 TCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGC 331 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||||||||||| Sbjct 332 GTGATGGTCTTGCCCGTCA 350 >seq8098 Length=4112 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || ||||| || || ||||||| ||||| || || | || | ||||| Sbjct 400 CAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATC 341 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| | || || ||||| || || || || |||||||| Sbjct 340 TTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTC 281 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || || ||||| || | ||||| || | ||||| || Sbjct 280 CTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGT 221 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 220 CTTGCCCGTCA 210 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || || | || | |||||| Sbjct 171 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 112 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || | || ||||| || ||||| || || ||||| Sbjct 111 TCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC 52 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 || |||||| ||| ||| ||||||||||| || Sbjct 51 TGAATCTTTGCCTTGACATTCTCGATGGTGTCAGA 17 >seq362 Length=500664 Score = 91.5 bits (100), Expect = 4e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 7557 TTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGT 7616 ||| || ||||| | || || ||||| ||||| | ||||| || | ||||| || | Sbjct 212246 TTATAATGTTATCGTAACTGCCCATGCTTTTGTCGTAATTTTTTTAATAGTTATACCAAT 212187 Query 7617 TATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 ||| || || |||| || || ||| | || || |||| | ||||| ||||| || || Sbjct 212186 TATAATCGGATGTTTTGGTAACTGACTTGTACCACTAATACTCGGTGCCCCTGACATAGC 212127 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || || | | ||||||||||| |||||| |||| || ||||| || ||||| Sbjct 212126 CTTCCCTCGCATAAACAATATAAGCTTTTGACTACTTCCACCTTCACTACTTCTA 212072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191215269770750