Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq53 138 9e-28 >seq53 Length=3035741 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 2982886 AGACCAGTGATGTGTGCAATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGC 2982945 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||| ||| | || | |||||| |||||||| || |||||||| || Sbjct 2982946 ACCCCAAGTCCCAGGTCAGCCGATCGCTGGTACAGCTGGCATGACAGCTCTCCATCCGCG 2983005 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| || || |||| || ||||| ||||| || |||||||| Sbjct 2983006 ACGTAGAATTGGCACAGTGCGTGGCATGGAGGCAGCGCCATGAG 2983049 Score = 116 bits (128), Expect = 3e-21 Identities = 117/151 (77%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-- 30072 |||| || | ||||||||| ||||| || || |||||||||||||| || | |||| Sbjct 2983601 CGAAGTGGCGCCACTGGAAGCCGTAGACAGGACCCAGGTCTCCCTCCTC---GCGCTCGG 2983657 Query 30073 -GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCT 30131 ||||||| | ||||| ||| | | || |||||||||||||||||||| || |||| Sbjct 2983658 GGAAGCCCTGCCGGTCCAGGAAGGCCCGCGAGCCGTTGGCGTCCCAGATCTTGACGCCCT 2983717 Query 30132 TCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 | |||||||||| |||| || |||||||| Sbjct 2983718 TGGCGGAGAGCTCCTTGGCATTGGTGGACCC 2983748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405736871431750