Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq53 138 8e-28 >seq53 Length=3035741 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 2982886 AGACCAGTGATGTGTGCAATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGC 2982945 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||| ||| |||| | |||||| ||||| || || ||||||||||| Sbjct 2982946 ACCCCAAGTCCCAGGTCAGCCGATCGCTGGTACAGCTGGCATGACAGCTCTCCATCCGCG 2983005 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| || || || | |||||||| ||||| || |||||||| Sbjct 2983006 ACGTAGAATTGGCACAGTGCGTGGCATGGAGGCAGCGCCATGAG 2983049 Score = 129 bits (142), Expect = 4e-25 Identities = 132/171 (77%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||| || || ||||| || | ||| ||||| ||||| || || |||||||| Sbjct 2983581 CATGTCGGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGACCCAGGTC 2983640 Query 27549 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 |||||| || | |||| ||||||| | ||||| ||| | | || |||||||| Sbjct 2983641 TCCCTCCTC---GCGCTCGGGGAAGCCCTGCCGGTCCAGGAAGGCCCGCGAGCCGTTGGC 2983697 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||||| || ||||| |||||||||| |||| || |||||||| Sbjct 2983698 GTCCCAGATCTTGACGCCCTTGGCGGAGAGCTCCTTGGCATTGGTGGACCC 2983748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369119347344875