Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq81637 152 1e-31 seq1985 145 2e-29 seq8098 134 3e-26 seq20 109 1e-18 >seq81637 Length=1039 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||||||||| |||||||||||||| || || | || | |||||| Sbjct 389 AGGACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCT 448 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || |||| ||||||||| | | ||| || ||||| || Sbjct 449 TCAAGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 508 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || |||||| ||| || |||| | | |||| || ||| || || || || || || Sbjct 509 TGGATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTC 568 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| |||||||||||||||| |||||| Sbjct 569 TTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||||||||| || ||||||||||| || | | || | ||||| Sbjct 160 GAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATC 219 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| | |||||||||||| | | ||| || ||||| || Sbjct 220 TTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTC 279 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| |||| | |||| || ||| || || || || || || Sbjct 280 CTGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGT 339 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| || |||| |||||| Sbjct 340 CTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 372 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || |||||||| |||||||||||||| || || | || | ||||| Sbjct 616 GAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATC 675 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| || | ||| ||||| | | || || || || || Sbjct 676 TTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTC 735 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| |||| | | |||| || ||| || || ||||| || || Sbjct 736 CTGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGT 795 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 796 CTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 828 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || ||||||||||| || || | || | |||||| Sbjct 845 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCT 904 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || |||||||| || |||| ||||||||| | | ||| || ||||| || Sbjct 905 TCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 964 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| || |||| | |||| || ||| || || || || || || Sbjct 965 TGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTC 1024 Query 152073 TTGCCCGTGAGAGT 152086 |||||||| ||||| Sbjct 1025 TTGCCCGTCAGAGT 1038 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| |||| ||||||||| | | ||| || || || || || || ||| Sbjct 2 TTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATCCCCTCTTTGTCCTGGATCTTT 61 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || |||| | |||| || ||| || || ||||| || || ||||| || Sbjct 62 GCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTC 121 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| |||||| Sbjct 122 AGCGTCTTCACGAAGATCTGCAT 144 >seq1985 Length=32442 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||||||||| || ||||||||||| || || | || | |||||| Sbjct 32409 AGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 32350 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||| ||||| | | || || ||||| || Sbjct 32349 TCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 32290 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| |||||| |||| | |||| || ||| || || ||||| || || Sbjct 32289 TGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTC 32230 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| |||||||||||||||| ||||||||| Sbjct 32229 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTT 32195 >seq8098 Length=4112 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| |||||||||||||| || || | || | |||||| Sbjct 399 AGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 340 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| | || ||||||||| | | ||| || ||||| || Sbjct 339 TCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 280 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | |||| || ||| || || ||||| || || Sbjct 279 TGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTC 220 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| || |||| |||||| Sbjct 219 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 188 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || |||||||| || ||||||||||| || || | || | |||||| Sbjct 171 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCT 112 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| |||||||||||||| | | || || || || || Sbjct 111 TCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC 52 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047 ||||| ||| |||||| |||| | | |||| || Sbjct 51 TGAATCTTTGCCTTGACATTCTCGATGGTGTCAGA 17 >seq20 Length=4946952 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || ||||| ||||||||||| |||| | || | |||||| Sbjct 2722201 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 2722260 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | || |||||||| || Sbjct 2722261 TCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 2722320 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 2722321 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTTGGCTCCACCTCCAGGGTGATG 2722377 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || ||||||||||||| |||||| Sbjct 2722378 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2722412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152547585789875