Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq416 141 1e-28 seq144 140 5e-28 >seq416 Length=412842 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||| |||||||||||||||||| | || ||||||||| |||| |||||||||| Sbjct 5484 CCCCCGAATGTGCTGGGCTTCCAGTACTCGGGCGAGCAGATGGGGTTCCCCATGAGGCCC 5543 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||| ||||| || || |||| ||| | || |||| |||||||||||| ||| || Sbjct 5544 TTGAGCGAGAAGGGGGCGCCCATCTCCACCATCGTCTCGCCGAAGATGGCGCCGGGCCGC 5603 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||| ||||| | || || | ||| ||||||| || || ||||| ||||| | | Sbjct 5604 GGCCGTTCCAAGATGAGCCCCGGGTAGAGCTCCAGGGCGTCCACGTCGCCGTACATCTCG 5663 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || || || |||||| | || |||| Sbjct 5664 CGCAGCTCCGCGGCCATCTCCGTCTCGCCTG 5694 >seq144 Length=1555788 Score = 140 bits (154), Expect = 5e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||||||| |||| |||||||| |||||||||||||| ||||||||||| ||| ||| Sbjct 1170359 TTGACGATGTCGAAGCCCACGTCGCCGCCGAAGGTGCTCGGCTTCCAGTAGAGCGGCGAG 1170300 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || | | ||| |||||| || ||||| |||||||| ||||| | ||| | |||||| Sbjct 1170299 CACACGGGGTTGCTCATGAGACCCTTGAGCGAGAACGGCGCCCCAATCTCCACCATGCTC 1170240 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| |||| | | || | ||| || ||| || || ||| | |||||| Sbjct 1170239 TCGCCGAACATGGAGCCCTGGCGCGACTTCTCGGCCAGGAGGCCCACGTAGAACTCCACG 1170180 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || ||||| ||||| || || | ||||| || ||||||| || |||| Sbjct 1170179 GCGTCCACGTCGCCGTACAGTTCCTCCATCTCGGCTGCCATCTCCTCGTCGCCTG 1170125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716105037320000