Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq81637 156 1e-32 seq20 154 4e-32 seq1985 143 6e-29 seq8098 136 1e-26 seq65151 86.0 2e-11 seq5470 84.2 5e-11 >seq81637 Length=1039 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| || ||||| || || ||| Sbjct 597 CAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCTGAC 538 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||| || |||||||| || || ||||| || |||||||| Sbjct 537 ACCATCGAGAACGTGAAAGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCAGCAG 478 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| |||||||| | || || || || || ||| || Sbjct 477 CGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCGCGGACTACAACATC 418 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || |||||||| || Sbjct 417 CAAAAGGAGTCTACTCTGCATCTGGT 392 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || |||||||| ||| ||| Sbjct 825 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCTGAC 766 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||||||||||||||| || || || || ||||| || Sbjct 765 ACCATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAACAG 706 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| | || || || || || ||| || Sbjct 705 CGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACGCTGGCAGACTACAACATC 646 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || || Sbjct 645 CAAAAGGAGTCTACCCTCCACCTGGT 620 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 177938 AACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGT 177997 |||||| || || || || ||||| || |||||||| || ||||| || |||||||| Sbjct 1039 AACTCTGACGGGCAAGACCATCACGCTGGAGGTGGAGGCATCTGACACGATTGAGAACGT 980 Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 ||| |||||||||||||| || || ||||| || |||||||| || || || ||||| Sbjct 979 GAAAGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAGCAGCGGCTGATTTTCGC 920 Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 ||| || || | |||||||| | || || || || || ||| |||| || || || || Sbjct 919 CGGCAAGCAATTGGAAGATGGTCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCTAC 860 Query 178118 ACTGCATCTTGTT 178130 || || || ||| Sbjct 859 CCTCCACCTGGTT 847 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| || ||||| || || ||| Sbjct 369 CAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCTGAC 310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 309 ACGATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAGCAG 250 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || ||||| |||||||| | || || | || || ||| || Sbjct 249 AGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGACTACAACATC 190 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||||| ||| Sbjct 189 CAGAAGGAGTCTACTCTGCATCTCGTT 163 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 141 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACTCTGGAGGTTGAGGCATCTGAC 82 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||| ||||||||||| || ||||| || |||||||| Sbjct 81 ACGATTGAGAACGTGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCCCCAGACCAGCAG 22 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || ||||||||||| || Sbjct 21 CGGCTCATCTTCGCCGGCAA 2 >seq20 Length=4946952 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || || Sbjct 2722409 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCAAGTG 2722352 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || ||||| ||||||| Sbjct 2722351 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGC 2722292 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 2722291 AGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTACAACA 2722232 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 2722231 TCCAGAAAGAATCCACCCTCCACCTGGT 2722204 >seq1985 Length=32442 Score = 143 bits (158), Expect = 6e-29 Identities = 161/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| ||||| || || || || ||||| || |||||||| Sbjct 32195 AAAATGC---AGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAG 32251 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||| || ||||| ||||| |||||| |||||||| || || || || || Sbjct 32252 GCCTCTGACACGATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCA 32311 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || || ||||||||||| || || || |||||||| | || || || || Sbjct 32312 GACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGAC 32371 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| || || || || ||||| || || Sbjct 32372 TACAACATCCAGAAGGAGTCTACTCTGCACCTGGT 32406 >seq8098 Length=4112 Score = 136 bits (150), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| || |||||||| || ||| Sbjct 191 CAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCATCTGAC 250 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 251 ACGATTGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCAGCAG 310 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| |||||||| | || || || || || ||| || Sbjct 311 CGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACGCTCGCAGACTACAACATC 370 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| || || || || ||||| ||| || | || || Sbjct 371 CAAAAGGAGTCTACTCTACATCTGGTTCTGCGGCTGAG 408 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || |||||||||||||| ||||| |||||||||||||||||| || || || || ||| Sbjct 17 TCTGACACCATCGAGAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCCCCAGAC 76 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| | || ||||||||||| || || || |||||||| | || || || || || Sbjct 77 CAGCAGAGGCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTAC 136 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||| || || || || || || || || Sbjct 137 AACATCCAGAAGGAGTCTACCCTCCACCTGGT 168 >seq65151 Length=1204 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAA 178005 || || || |||| ||| || ||| | ||||| ||||||| |||||| | || || Sbjct 533 GGCAAGACCATCAGCCTTGAAGTGCA--GCTCATGGACACCACGGAGAACCTGAAGGCAA 590 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| |||||||| || || || ||||||||||||||| | || |||| |||| | | | Sbjct 591 AGATCCAGGACAAGGAGGGGATTCCTCCGGACCAGCAAAGGCTGATCTACGCCAGCAGAG 650 Query 178066 AGCTCGAAGATGG 178078 |||| || ||||| Sbjct 651 AGCTGGAGGATGG 663 >seq5470 Length=5243 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 |||||| || ||| |||| || | |||| |||| ||| ||| |||||||||| ||| Sbjct 3286 CGTGAAGACGCTCTCAGGGAAGATGATCCCCCTGGAGTGGGACCCTTCAGACACCACCGA 3227 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGA-ATCCCTCCGGACCAGCAACGACTTA 178050 ||| |||||| | ||| || || | ||| || || |||||||||||||| || | Sbjct 3226 GAAGGTCAAAGCGATGATCCACGA-ACAGACGGGGATTCCTCCGGACCAGCAGATTCTGA 3168 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||||||||| | | | || ||||| || Sbjct 3167 TCTTCGCCGGCAGATATCTGGAAGACGG 3140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202402910833250