Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1985 154 1e-32 seq81637 141 9e-29 seq20 136 4e-27 seq8098 127 2e-24 seq2491 100 3e-16 >seq1985 Length=32442 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| ||||| | ||| ||||| | || || Sbjct 32406 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCC 32347 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || |||||||||||||| ||||||||||||||||| | ||||| || |||||||||| | Sbjct 32346 AGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 32287 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| | ||||||||||| || || || || Sbjct 32286 ATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTG 32227 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 |||||||| ||||| ||||| |||||||| || || Sbjct 32226 CCCGTCAGAGTCTTCACGAAGATCTGCATTTTGTC 32192 >seq81637 Length=1039 Score = 141 bits (156), Expect = 9e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| || |||||| || ||||| ||||| | ||| ||||| | || || Sbjct 392 ACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCTTCA 451 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| ||||| ||||| | ||| | | |||||||||| || Sbjct 452 AGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC-TG 510 Query 41774 ATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||||||||| ||| | | ||||| | ||| ||||||| ||| || || || Sbjct 511 GATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTT 570 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| ||||| ||||| |||||||| Sbjct 571 GCCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || ||||||||| ||||| ||||| ||| Sbjct 146 CCACCTCGAAGCCGGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 205 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||||||||| |||| | ||| ||||| | ||| Sbjct 206 AGGGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 265 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | ||| | | | ||||| | ||| || Sbjct 266 ATCCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAAC 324 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||| || || || |||||||||||||| || || ||||||||| Sbjct 325 CTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 373 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || |||||| || ||||| ||||| | Sbjct 602 CCACCTCGAAGCCGGAGGACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCC 661 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| ||||||||||||||||| | |||| Sbjct 662 AGCGTACGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 721 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || | ||| | | | ||||| | |||||| Sbjct 722 ATCCCCTCTTTGTCC-TGAATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCAC 780 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || ||||||||||| ||||| ||||||||| Sbjct 781 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 829 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||||||||| ||||| ||||| | || ||||| | || || Sbjct 848 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCTTCC 907 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||||||||| ||||| ||||| ||||| | ||| | | |||||||||| || Sbjct 908 AATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC-TG 966 Query 41774 ATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || |||| ||| | | ||||| | ||||||||||| ||| || || || Sbjct 967 AATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCACCTCCAGCGTGATGGTCTT 1026 Query 41833 ACCCGTCAGCGT 41844 |||||||| || Sbjct 1027 GCCCGTCAGAGT 1038 >seq20 Length=4946952 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| || ||||| ||||| |||||||| Sbjct 2722186 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 2722245 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 2722246 AGCGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGA 2722305 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||| ||| ||| || ||||| | | ||||| || | ||||||| Sbjct 2722306 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACC 2722365 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || |||||||| ||||| ||||| ||||||||| Sbjct 2722366 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 2722413 >seq8098 Length=4112 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || || |||||| || ||||| ||||| | ||| ||||| | || || Sbjct 396 ACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCC 337 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| |||| ||||| ||||| | ||| | | |||||||||| | Sbjct 336 AGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 277 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| | ||||||||||| || || || || Sbjct 276 ATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCACCTCCAGAGTGATGGTCTTG 217 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||||||||| || || ||||||||| Sbjct 216 CCCGTCAGCGTCTTGACAAAGATCTGCATG 187 Score = 98.7 bits (108), Expect = 9e-16 Identities = 100/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||||||||| ||||| ||||| | ||| ||||| | || || Sbjct 168 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCC 109 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || |||||||||||||| ||||| | ||| ||||| | ||||| || ||| |||||| || Sbjct 108 AGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC-TG 50 Query 41774 ATTTTTTGC 41782 | | ||||| Sbjct 49 AATCTTTGC 41 >seq2491 Length=20969 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||||||||| |||| |||||||||||| | || || Sbjct 10687 ACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTGGGAGAGGGTGCGACCATCCTCC 10628 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||| |||| | ||||| | ||| |||| || |||| | |||| ||| | Sbjct 10627 AGCTGTCTGCTGGCGTAGATCAGCCTCTGCTGGTTCGGAGGAATCCCTTCCTGCTCCTGG 10568 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || | |||||| | | ||||| | | |||||| || | | || || || Sbjct 10567 ATCATCGTCTTCAAGTTCTCCGTGGTGTCTGTGGGCTCCACTTCAAGGGCGATGGTCTTC 10508 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || ||| ||||||| |||||||| ||||| Sbjct 10507 CCGCTCGCTGTCCTTACGAAGATCTGCATCTTATC 10473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461806300850000