Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq463 159 4e-34 >seq463 Length=246817 Score = 159 bits (176), Expect = 4e-34 Identities = 135/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| ||| || | ||||||||| ||||| | |||||| || |||||||| Sbjct 226608 CTTGAGACCAGTGATGTGTGCAATCATGTAGGTGAGCAGTGCGTAGCTAGCGATGTTGAA 226667 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||||||| || |||| ||| |||| ||||||||||||||||| || ||||| || | Sbjct 226668 GGGCACCCCAAGTCCCAGGTCAGCCGATCGCTGGTACAGCTGGCATGACAGCTCTCCATC 226727 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 ||| |||||||| |||||||| |||||| || ||||| |||||| Sbjct 226728 CGCGACGTAGAATTGGCACAGTGCGTGGCATGGAGGCAGCGCCATG 226773 Score = 122 bits (134), Expect = 1e-22 Identities = 122/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 |||| |||||||| | ||||||||| |||||||| || |||||||| || ||| | | Sbjct 227321 CGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGACCCAGGTCTCCTTCCTCGCGCT 227380 Query 146105 -GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 | ||||| ||| || | |||||| |||| || |||||||||||||| ||||||||| Sbjct 227381 CGGGAAAGCCCTGCC-GGTCCAGGAAGGCCCGCGAGCCGTTGGCGTCCCAAATCTTGACG 227439 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 ||| | ||||||||||| |||| | ||||| ||| Sbjct 227440 CCCTTGGCGGAGAGCTCCTTGGCATTGGTGGAACCC 227475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589892364120200