Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10225 125 6e-24 seq339 104 2e-17 >seq10225 Length=9847 Score = 125 bits (138), Expect = 6e-24 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| |||| || |||| ||||| ||| |||||||| || ||||| ||||| || | Sbjct 9134 CCCCTC--AGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGA 9191 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| |||||||| | || || | |||||||||| || | Sbjct 9192 GGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGGA 9251 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | | | || || || |||| | Sbjct 9252 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCT 9311 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| ||||||||||| || | ||| |||||||| || ||||| Sbjct 9312 CCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| |||| || |||| |||| ||| |||||||| || ||||| ||||| || | Sbjct 8906 CCCCTC--AGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGA 8963 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| || | || || | |||||||||| || | Sbjct 8964 GGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGA 9023 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | | | || || || |||| | Sbjct 9024 TGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCT 9083 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| ||||||||||| || | ||| |||||||| || ||||| Sbjct 9084 CCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| |||| || |||| |||| ||| |||||||| || ||||| ||||| || | Sbjct 9362 CCCCTC--AGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGA 9419 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA-AGTCTCTGCTGGTCCACGGGC 21068 |||| || | || |||| ||| ||||| || | || || | |||||||||| || Sbjct 9420 GGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGGG 9479 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || || || |||| Sbjct 9480 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACC 9539 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | ||| || || || || ||||| Sbjct 9540 TCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 >seq339 Length=724323 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||| || || | || |||| ||| |||||| Sbjct 491716 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491657 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| ||||||||| || | |||||||||||| ||||||| || Sbjct 491656 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491597 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 491596 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 491537 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 491536 TTCACGAAGATCTGCAT 491520 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||| || || | || |||| ||| |||||| Sbjct 491944 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491885 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| ||||||||| || | |||||||||||| ||||||| || Sbjct 491884 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491825 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 491824 ACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 491765 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 491764 TTCACGAAGATCTGCAT 491748 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||| || || | || |||| ||| |||||| Sbjct 492172 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 492113 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| ||||||||| || | |||||||||||| ||||||| || Sbjct 492112 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 492053 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 492052 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 491993 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 491992 TTCACGAAGATCTGCAT 491976 Score = 100 bits (110), Expect = 2e-16 Identities = 147/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||| || || | || |||| ||| |||||| Sbjct 491260 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491201 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| ||||||||| || | |||||||||||| ||||||| || Sbjct 491200 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491141 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| |||||| || | || ||||||||||| || | || Sbjct 491140 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTC 491081 Query 21159 TTGACAAATATTTGCAT-TTTGAATCT 21184 || || || |||||||| || ||||| Sbjct 491080 TTCACGAAGATTTGCATGATTAAATCT 491054 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||| || || | || |||| ||| |||||| Sbjct 491488 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491429 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| ||||||||| || | |||||||||||| ||||||| || Sbjct 491428 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491369 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||| || | || ||||||||||| || | || Sbjct 491368 ACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTC 491309 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 491308 TTCACGAAGATCTGCAT 491292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422130517168580