Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10225 183 3e-41 seq339 140 3e-28 seq297 105 7e-18 >seq10225 Length=9847 Score = 183 bits (202), Expect = 3e-41 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| ||||||||| | || || || ||| || Sbjct 9129 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9070 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 9069 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9011 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | || |||||| ||||||||| Sbjct 9010 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAA 8951 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| | || ||||| || || |||| |||||||||||| Sbjct 8950 CATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGCGGCG 8901 Score = 181 bits (200), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| ||||||||| | || || || ||| || Sbjct 9357 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9298 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 9297 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9239 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||||||| |||||||| || | || |||||| |||||||| Sbjct 9238 GCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCAGACTACAA 9179 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || |||||||| || |||| ||||||| ||| Sbjct 9178 CATCCAGAAGGAGTCGACTCTGCATCTGGTCCTGCGGCTGAGGGGAGGC 9130 Score = 170 bits (188), Expect = 2e-37 Identities = 178/230 (77%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||||||| | || || || ||| || Sbjct 9586 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9527 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 9526 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9468 Query 40809 GCAACGACT-CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| || || |||| ||| ||||| ||| |||| || | || |||||| |||||||| Sbjct 9467 GCAGCGGCTGGATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTACA 9408 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| | || ||||| || || |||| ||||||| ||| Sbjct 9407 ACATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGAGGC 9358 >seq339 Length=724323 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| |||||||| |||| || || | | Sbjct 491064 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCAAGT 491123 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| || | ||||| || ||||| || | ||||| Sbjct 491124 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 491182 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 491183 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 491242 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || || |||| Sbjct 491243 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 491278 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| |||| || || | | Sbjct 491292 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 491351 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| || | ||||| || ||||| || | ||||| Sbjct 491352 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 491410 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 491411 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 491470 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || || |||| Sbjct 491471 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 491506 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || | | Sbjct 491520 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491579 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| || | ||||| || ||||| || | ||||| Sbjct 491580 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 491638 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 491639 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 491698 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || || |||| Sbjct 491699 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 491734 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || | | Sbjct 491976 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 492035 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| || | ||||| || ||||| || | ||||| Sbjct 492036 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 492094 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 492095 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 492154 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || || |||| Sbjct 492155 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 492190 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || | | Sbjct 491748 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491807 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| || ||||| || | |||||| Sbjct 491808 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491867 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||||||||| ||| |||| || | ||||| || |||||||||| Sbjct 491868 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491927 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || |||| || || || || |||| Sbjct 491928 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 491962 >seq297 Length=420882 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || || ||| | ||||||| || || ||||||||| ||||||||||||| || ||| Sbjct 395225 GGTGAACGCGTTCTGGCCTTTGCTGCTGTCGAGGGCATCTTCTTTTCGGGGTCGTTTGCC 395284 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| || || |||||||||||||| || ||| ||| |||||| Sbjct 395285 TCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGCCTCACATTCTCCAATGAGCTC 395344 Query 117152 ATCTCCAGGGACGAGG 117167 || | | ||||||| Sbjct 395345 ATTAGCCGTGACGAGG 395360 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/124 (80%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGA-CACGAGCGACTGGGAGCGCTTGAACGACA-ACGAGCGCCA 116742 ||||||| |||||||| || || ||| |||||||||| |||| | || | |||| || Sbjct 393980 AGGTGGATCTGTCCAAAGATCAGCAGC-ACTGGGAGCGGCTGAA-GCCAGAGGAGCAACA 394037 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| ||||| || || ||||| || |||||||||||||| ||||| |||||||| Sbjct 394038 CTTCATCTCCCACGTCCTCGCGTTTTTTGCTGCCAGCGACGGCATTGTCAATGAGAATCT 394097 Query 116803 GGTC 116806 |||| Sbjct 394098 GGTC 394101 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||| | | ||||| || |||||||| ||||| || Sbjct 394234 GGTGGAGCGCTTCAGCCAGGAAGTGCAGATCACAGAGGCACGATGCTTCTATGGCTTCCA 394293 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| ||||||||| | |||||||| ||||| ||||||||||||||| Sbjct 394294 AATCGCAATGGAGAACATCCACTCGGAGATGTACAGTCTTCTCATCGACACGTAC 394348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||||||||| ||||||| ||||| ||||||| || |||||||| |||||| Sbjct 394721 TTCAATGCCATCGAGACTCTGCCGTGTGTCAAGAAGAAGGCAGACTGGGCGCTCCGCTGG 394780 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGG 117033 ||| ||| ||| | ||| ||||||| Sbjct 394781 ATCTCCGACAGTAATGCCACCTTCGG 394806 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA-GCGACCGAGC 117223 |||||||||| ||||||||||| || | ||||| || ||||||| | | ||| Sbjct 396473 AGGGTCTGCACTGCGACTTTGCATGCCTCATGTTCCGCCACCTGGTGCACAAGCCTGAG- 396531 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | |||||| || | ||||||| | || || || ||| |||||| || || || Sbjct 396532 GAGGCGCGTGTACAGCAGATCGTGATGGATGCCGTGATCATTGAGCAGGAGTTTCTGACG 396591 Query 117284 GAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 || |||||||| || || | || | || || || ||| ||| ||||||||| Sbjct 396592 GATGCGCTGCCCGTCAACCTTATCGGCATGAACTGTGACCTCATGAAGCAGTACATCGAG 396651 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAG 117385 || || |||||||||||||| ||| || | | | |||||| Sbjct 396652 TTTGTGGCCGACAGGCTGCTTGGCGAACTCGGCTGTGCCAAG 396693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515058161798800