Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq99 145 5e-30 seq15077 93.3 3e-14 >seq99 Length=974049 Score = 145 bits (160), Expect = 5e-30 Identities = 577/893 (65%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| | || ||| | ||||||||| |||||||| |||||| ||| | Sbjct 382250 CCGCTGAGCGAGGAGGAGGCGGCCTTCCCCATCGCCTACTCCGTGGTGGCCCACCACCGC 382191 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 | || | | || |||||||||| ||| | || || || |||||| | ||||| || Sbjct 382190 GTGGACATGCTGGAGAGGCTGCTGCGCGCCATCTACGCGCCGCAGAACGTCTACTGCCTC 382131 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| |||||| || | | | | |||||||||| || | | ||| Sbjct 382130 CACGTGGACCAGAAGTCGCCGCCGCCCTACCAAGAGGCGGTGCGCGCTCTCGCCGCGTGC 382071 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 |||||||| |||||||||||||| | || | ||||| || |||||||| | Sbjct 382070 TTCCCCAACGTCTTCATGGCCAGCCGGCAGGAGCGCGTGGTCTACACCTCCTGGCTGCGC 382011 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGA-CTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 ||||| || ||||| ||||| ||| || || | | | || | ||| |||||||| Sbjct 382010 GTGCAGGCCGACCTCAACTGCATGCGGGACCTCGTGGCCGCGC-CGCAGCCCTGGAAGTA 381952 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 || | || ||||| ||||||||||| || ||||| |||||||| | || Sbjct 381951 TTTCATCAACCTGTGCGGCCTGGACTTCCCCATTAAAACCAACCTGGAGATGGTGCGAGC 381892 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTAC-CTTCTGAGTCCaaaa 108105 || | || || ||||||| |||||||| | | || || | | ||| Sbjct 381891 GCTGCGCGCCCTCAACGGCGAGAACAGCATGGAGTC-CATGCACACTCCCGGCGGCAAGG 381833 Query 108106 aaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCCTACCAGCAAGA 108162 ||| ||| | |||| | ||| |||| ||| ||| | | || || ||| Sbjct 381832 TGGGTCGGTGGCAGATCCGCCACGAGATCGTGAACGACGGCCTGCGCTCCACGGGCGAGA 381773 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 |||| |||||| || ||||||||| | ||||| || || | |||| Sbjct 381772 AGAAGTCCCCTCCGCCCATCCCCACGCCCATGTTCTCCGGGAACGCGTACATCGTGGTGA 381713 Query 108223 CTCGAGCCTTTGTCCAACATGT-CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281 | || ||||| ||| | || || || || | |||| | | | || | || ||| Sbjct 381712 CGCGCGCCTTCGTCGAGCACGTGCTGAG-CGACCCCACGGCGCGGGCGCTCATGGAGTGG 381654 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGT 108339 | || ||||| | ||||||||||| ||||| ||||| || || ||||| ||| ||| Sbjct 381653 GAGAAGGACACGTTCAGCCCCGACGAGCACCTGTGGGCGACGCTGCAGCGCCTGC-CCG- 381596 Query 108340 GGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCG 108399 || |||| ||||| || ||| |||||| || | ||||||| ||||||| Sbjct 381595 GGGTGCCGGGCTCCACGCCGCCGCACGACAAGTACGACGTGGAGGACATGATGGCCATCG 381536 Query 108400 CCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCA 108458 | | ||||| |||| ||| ||||| || || ||| |||| |||| || | Sbjct 381535 CGCGCCTCGTGCGGTGGTCTTACATGGAGGGCGACACTCTGCAAGGGGCCGCC-TACCCG 381477 Query 108459 CCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGG 108518 |||||| || | ||| | ||||||||||||| || | ||| ||||||| ||| Sbjct 381476 CCCTGCCGCGGCACCCACATGCGGGCCATCTGCATCAACAGCGCCAAGGACCTGGCGTGG 381417 Query 108519 ATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | ||| || | | || || || | |||||| | ||| || ||||| || Sbjct 381416 GTGCTCAAGCAGCGGCATCTGTTCGTCAACAAGCTGGACTCGGACGTGGACGA 381364 >seq15077 Length=35091 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||||| |||||||| |||| | ||| | | || | | || ||||||| Sbjct 28096 CTTCCCCATCGCCTACTCCGTGGTCGCCCACCACCGCGTGGACATGCTGGAGAGGCTGCT 28155 Query 107771 GCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA 107830 ||| ||||| || ||||| |||||| | ||||| |||||||||| | |||||||| Sbjct 28156 GCGTGCCGTCTACGCCCCGCAGAACCTCTACTGCCTCCACGTGGACGCCAAGTCCCCCCG 28215 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 | | | ||||||| ||| | ||||||||||||| || ||| |||| Sbjct 28216 CGCCTACCTGGAGGCGGCGCGCGCCCTCGCCGCCTGCTTCCCCAACGTGTTCGTGGCGGC 28275 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 | ||| || || || ||||| ||||| |||||||| || ||||| ||||| || Sbjct 28276 ACACCTGGAGAGAGTCGTCTACGCCTCGTGGTCGAGAGTGCAGGCCGACCTCAACTGCAT 28335 Query 107951 G 107951 | Sbjct 28336 G 28336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348162665627370