Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq339 127 2e-24 seq10225 118 9e-22 >seq339 Length=724323 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||| ||||| ||||| ||||| ||||| || ||||| |||| || || || Sbjct 491060 AATCATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCC 491119 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||| |||| | ||||| || ||| | ||||||||||||| | || |||| Sbjct 491120 AAGTGACACCATCGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCG 491178 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| ||||||||||| || || ||| | Sbjct 491179 ACCAGCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACT 491238 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || |||||||| || || || ||||| || Sbjct 491239 ACAACATCCAGAAAGAATCCACCCTCCACCTGGTCCT 491275 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || ||||| |||| ||||| || Sbjct 491291 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAG 491350 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || ||| | ||||||||||||| | || ||||||| Sbjct 491351 TGACACCATCGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGACC 491409 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| ||||| ||||||||||| || || ||| || | Sbjct 491410 AGCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACA 491469 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || |||||||| || || || ||||| || Sbjct 491470 ACATCCAGAAAGAATCCACCCTCCACCTGGTCCT 491503 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 491519 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAG 491578 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || ||| | ||||||||||||| | || ||||||| Sbjct 491579 TGACACCATCGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGACC 491637 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| ||||| ||||||||||| || || ||| || | Sbjct 491638 AGCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACA 491697 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || |||||||| || || || ||||| || Sbjct 491698 ACATCCAGAAAGAATCCACCCTCCACCTGGTCCT 491731 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 491747 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAG 491806 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || ||| | ||||||||||||| | || ||||||| Sbjct 491807 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGACC 491865 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| ||||| ||||||||||| || || ||| || | Sbjct 491866 AGCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACA 491925 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || |||||||| || || || ||||| || Sbjct 491926 ACATCCAGAAAGAATCCACCCTCCACCTGGTCCT 491959 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 491975 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAG 492034 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || ||| | ||||||||||||| | || ||||||| Sbjct 492035 TGACACCATCGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGACC 492093 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| ||||| ||||||||||| || || ||| || | Sbjct 492094 AGCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACA 492153 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || |||||||| || || || ||||| || Sbjct 492154 ACATCCAGAAAGAATCCACCCTCCACCTGGTCCT 492187 >seq10225 Length=9847 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || || || | || Sbjct 9130 CATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTC 9071 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 9070 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9011 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| ||||||| ||| | ||| || || Sbjct 9010 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAA 8951 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || |||||||| || ||||| || | ||||||||||| Sbjct 8950 CATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGCGG 8903 Score = 118 bits (130), Expect = 9e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || ||||| ||||| ||||| ||||| || |||||| | || || || | | Sbjct 9588 ACATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCT 9529 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||||| | || | ||||| | || ||||||||| ||| | || || |||| Sbjct 9528 CCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 9469 Query 31311 AGCAGCGTCT-AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||| || || ||||| ||||| ||||||||||| ||| | ||| || Sbjct 9468 AGCAGCGGCTGGATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTAC 9409 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || |||||||| || ||||| || | |||||||| || Sbjct 9408 AACATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGAGG 9359 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || || || | || Sbjct 9358 CATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTC 9299 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 9298 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9239 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| ||||||| ||| | || || || Sbjct 9238 GCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCAGACTACAA 9179 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || |||||||| |||||||| || | |||||||| || Sbjct 9178 CATCCAGAAGGAGTCGACTCTGCATCTGGTCCTGCGGCTGAGGGGAGG 9131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445627070139600