Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq339 122 2e-22 seq297 84.2 5e-11 >seq339 Length=724323 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || || || Sbjct 491944 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491885 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || ||||| |||||||| || Sbjct 491884 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491825 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 491824 ACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 491765 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 491764 TTCACGAAGATCTGCAT 491748 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || || || Sbjct 491488 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491429 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || ||||| |||||||| || Sbjct 491428 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491369 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 491368 ACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTC 491309 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 491308 TTCACGAAGATCTGCAT 491292 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || || || Sbjct 491716 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491657 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || ||||| |||||||| || Sbjct 491656 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491597 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 491596 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 491537 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 491536 TTCACGAAGATCTGCAT 491520 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || || || Sbjct 492172 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 492113 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || ||||| |||||||| || Sbjct 492112 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 492053 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 492052 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 491993 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 491992 TTCACGAAGATCTGCAT 491976 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || || || Sbjct 491260 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCC 491201 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || ||||| |||||||| || Sbjct 491200 GCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 491141 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 491140 ACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTC 491081 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 491080 TTCACGAAGATTTGCAT 491064 >seq297 Length=420882 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| || || || |||||||||||||| |||||| | ||||| ||| || Sbjct 395240 GCCTTTGCTGCTGTCGAGGGCATCTTCTTTTCGGGGTCGTTTGCCTCCATCTTCTGGCTG 395299 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 ||||| | || || ||||| || | || ||||| || || | || ||| | ||||| Sbjct 395300 AAGAAGCGTGGTCTCATGCCCGGCCTCACATTCTCCAATGAGCTCATTAGCCGTGACGA 395358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151029518938540