Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4215 86.0 3e-12 seq1448 86.0 3e-12 seq12448 82.4 4e-11 >seq4215 Length=26497 Score = 86.0 bits (94), Expect = 3e-12 Identities = 73/90 (81%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| ||| |||||| | |||||||||| ||||||| |||||||||||| Sbjct 11948 TAATAAAACATCG---TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 11892 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 11891 CCACGCTCTAACCAACTGAGCTAACCGGCC 11862 >seq1448 Length=83150 Score = 86.0 bits (94), Expect = 3e-12 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| |||||| | |||||| | |||||||||| ||||||| ||||||||| Sbjct 41817 AACTAAATAAAAATAAGCGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 41758 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACG 11536 |||| ||||||| |||||||||||||| |||| ||||| Sbjct 41757 GCACCACGCTCTAACCAACTGAGCTAACCGGCC--CGACG 41720 >seq12448 Length=7699 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6707 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6648 Query 11528 CC 11529 || Sbjct 6647 CC 6646 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261411510965380