Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq339 111 1e-19 seq10225 104 2e-17 >seq339 Length=724323 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || ||||| || || | ||| || ||| || ||| | | Sbjct 491506 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 491447 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || | ||||| | || ||||| || |||||||| ||||| ||| Sbjct 491446 TCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTG 491387 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || |||||||||||| ||| |||||| | ||| || || || | ||||| Sbjct 491386 TCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCA-CTTGGCTCAACCTCGAGAGTGAT 491328 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || || || ||||| ||||||||||||| Sbjct 491327 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGC 491290 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || ||||| || || | ||| || ||| || ||| | | Sbjct 491734 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 491675 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || | ||||| | || ||||| || |||||||| ||||| ||| Sbjct 491674 TCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTG 491615 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || |||||||||||| ||| |||||| | ||| || || || | ||||| Sbjct 491614 TCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCA-CTTGGCTCCACCTCCAGGGTGAT 491556 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || || || ||||| ||||||||||||| Sbjct 491555 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGC 491518 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || ||||| || || | ||| || ||| || ||| | | Sbjct 492190 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 492131 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || | ||||| | || ||||| || |||||||| ||||| ||| Sbjct 492130 TCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTG 492071 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || |||||||||||| ||| |||||| | ||| || || || | ||||| Sbjct 492070 TCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCA-CTTGGCTCCACCTCCAGGGTGAT 492012 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || || || ||||| ||||||||||||| Sbjct 492011 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGC 491974 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || ||||| || || | ||| || ||| || ||| | | Sbjct 491278 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 491219 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || | ||||| | || ||||| || |||||||| ||||| ||| Sbjct 491218 TCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTG 491159 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || |||||||||||| ||| |||||| | ||| || || || | ||||| Sbjct 491158 TCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCA-CTTGGCTCCACCTCGAGAGTGAT 491100 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 ||| || || || || || ||||| ||||| |||||| ||| Sbjct 491099 GGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGATTA 491059 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || ||||| || || | ||| || ||| || ||| | | Sbjct 491962 CGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 491903 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || | ||||| | || ||||| || |||||||| ||||| ||| Sbjct 491902 TCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTG 491843 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || ||||||||||| ||| |||||| | ||| || || || | ||||| Sbjct 491842 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCA-CTTGGCTCCACCTCCAGGGTGAT 491784 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || || || ||||| ||||||||||||| Sbjct 491783 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGC 491746 >seq10225 Length=9847 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||| || || || |||| |||| |||| ||||| ||| || ||||| || | ||| | Sbjct 8895 TTTAAACGCCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGT 8954 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | || | ||| |||||||| || ||| | ||||| | | ||||| | Sbjct 8955 AGTCGGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGT 9014 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| || || || ||||| | || || ||||||||| | | ||||| | | Sbjct 9015 CCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGG 9074 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | |||||||| || || || || || || |||||||||||||||| Sbjct 9075 CCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGC 9131 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| |||| ||| || ||||| || | ||| || || Sbjct 9131 CCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 9190 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||||||| || || | ||||| | | ||||| || ||||| Sbjct 9191 AGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9250 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| | | ||||| | | || || Sbjct 9251 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACC 9310 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || || |||||||||||||||| Sbjct 9311 TCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGC 9359 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||||| ||| || ||||| || | ||| || ||| Sbjct 9359 CCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9418 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT-TGCTGATCTGGAGG 94899 | || | ||| |||| ||| || ||| | ||||| | | ||||| || ||||| Sbjct 9419 AGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGG 9478 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || || || ||||| | || || ||||||||| | | ||||| | | || || Sbjct 9479 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9538 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||||| || || || || || ||||| |||||||||||| Sbjct 9539 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 9587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448151080981800