Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10225 116 3e-21 seq339 107 2e-18 >seq10225 Length=9847 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || | || | ||||||||||| || |||||||| ||| Sbjct 8902 GCCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 8961 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||||||||| ||| |||| | ||||||||||||||||| Sbjct 8962 GAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGG 9021 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | ||| | || |||| || ||| | Sbjct 9022 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9081 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || || || ||||||||| || Sbjct 9082 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGCCT 9133 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || | ||| | ||||||||||| || |||||||| || Sbjct 9130 GCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGC 9189 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||||||||| ||| |||| | ||||||||||||||||| Sbjct 9190 GAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGG 9249 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | ||| | || |||| || ||| | Sbjct 9250 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9309 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || || || ||||||||| || Sbjct 9310 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGCCT 9361 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || | || | ||||||||||| || |||||||| ||| Sbjct 9358 GCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 9417 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAAC-GCTGCTGGTCCGGAG 131125 | ||| || || || | ||||||||| ||| |||| | | ||||||||||||||| Sbjct 9418 GAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAG 9477 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| || ||||| | ||| | || |||| || ||| | Sbjct 9478 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCA 9537 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 9538 CCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 9587 >seq339 Length=724323 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || | || | ||| || || || || |||||||| ||| Sbjct 491519 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 491460 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | ||||||||| ||| |||| | ||||||||||| ||||| Sbjct 491459 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 491400 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 491399 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCAAC 491340 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || || || || || || ||||| ||||||||| Sbjct 491339 CTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491291 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || | || | ||| || || || || |||||||| ||| Sbjct 491747 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 491688 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | ||||||||| ||| |||| | ||||||||||| ||||| Sbjct 491687 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 491628 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 491627 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCAC 491568 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 491567 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491519 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || | || | ||| || || || || |||||||| ||| Sbjct 491975 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 491916 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | ||||||||| ||| |||| | ||||||||||| ||||| Sbjct 491915 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 491856 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 491855 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCCAC 491796 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 491795 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491747 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || | || | ||| || || || || |||||||| ||| Sbjct 492203 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 492144 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | ||||||||| ||| |||| | ||||||||||| ||||| Sbjct 492143 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 492084 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 492083 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCAC 492024 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 492023 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491975 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || | || | ||| || || || || |||||||| ||| Sbjct 491291 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 491232 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | ||||||||| ||| |||| | ||||||||||| ||||| Sbjct 491231 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 491172 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 491171 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCAC 491112 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| || | ||| || || || || || || ||||| || ||||||| Sbjct 491111 CTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGA 491062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471865266499200