Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10225 138 9e-28 seq339 102 7e-17 >seq10225 Length=9847 Score = 138 bits (152), Expect = 9e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||| ||| |||| |||||| || |||||||| || ||||||||||| || Sbjct 9131 CCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 9190 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || |||||||| | || |||||||| |||||| ||| Sbjct 9191 AGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9250 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | |||||| || |||| Sbjct 9251 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGGAGGCCTCCA 9308 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||||||| |||||||| |||||||| Sbjct 9309 CCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 131 bits (144), Expect = 1e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||| ||| |||| ||||| || |||||||| || |||||||||||||| | ||| | Sbjct 8912 AGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGG 8971 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | || |||| || ||||| || | || |||||||| |||||| ||| | |||||| Sbjct 8972 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCC 9031 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 ||||| || || || ||| || | | | |||||| || |||| |||| || Sbjct 9032 TTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGG 9089 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || |||||||| |||||||| |||||||| Sbjct 9090 TGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 122 bits (134), Expect = 7e-23 Identities = 167/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||| ||| |||| ||||| || |||||||| || |||||||||||||| Sbjct 9359 CCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9418 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAAT-AAGCCGCTGTTGGTCCACAGG 16827 | ||| | | || ||||| || ||||| || | || |||||||| |||||| ||| Sbjct 9419 AGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGG 9478 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | |||||| || |||| Sbjct 9479 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGGAGGCCTCC 9536 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||||||| || || || |||||||| Sbjct 9537 ACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 >seq339 Length=724323 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| || || || ||||||||||||| | Sbjct 491746 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 491687 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || |||||||| | || || ||||| ||||| ||| Sbjct 491686 AGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGA 491627 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 491626 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCGATGGTGTCACTTGGCTCCA 491569 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || || || |||||||| Sbjct 491568 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491520 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| || || || ||||||||||||| | Sbjct 491974 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 491915 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || |||||||| | || || ||||| ||||| ||| Sbjct 491914 AGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGA 491855 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 491854 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTTGGCTCCA 491797 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || || || |||||||| Sbjct 491796 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491748 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| || || || ||||||||||||| | Sbjct 492202 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 492143 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || |||||||| | || || ||||| ||||| ||| Sbjct 492142 AGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGA 492083 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 492082 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCGATGGTGTCACTTGGCTCCA 492025 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || || || |||||||| Sbjct 492024 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491976 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| || || || ||||||||||||| | Sbjct 491290 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 491231 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || |||||||| | || || ||||| ||||| ||| Sbjct 491230 AGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGA 491171 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 491170 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCGATGGTGTCACTTGGCTCCA 491113 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || ||||| || || || || || ||||| Sbjct 491112 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 491064 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| || || || ||||||||||||| | Sbjct 491518 CCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 491459 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || |||||||| | || || ||||| ||||| ||| Sbjct 491458 AGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGA 491399 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | ||||| Sbjct 491398 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCGATGGTGTCACTTGGCTCAA 491341 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || ||||| || || || || |||||||| Sbjct 491340 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404964550064950