Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20841 131 1e-25 seq19254 131 1e-25 seq18531 131 1e-25 seq18406 131 1e-25 seq14657 131 1e-25 seq16 131 1e-25 seq24658 127 1e-24 seq10830 127 1e-24 seq362 127 1e-24 seq272 123 2e-23 seq24957 122 6e-23 seq1404 118 7e-22 >seq20841 Length=3446 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1302 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1243 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1242 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1208 >seq19254 Length=4113 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 2436 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 2495 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2496 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2530 >seq18531 Length=4414 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1655 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1596 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1595 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1561 >seq18406 Length=4472 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 3722 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 3663 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3662 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 3628 >seq14657 Length=6171 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1940 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1999 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2000 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2034 >seq16 Length=1685948 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 949573 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 949632 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 949633 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 949667 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1091804 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1091863 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1091864 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1091898 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1213379 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1213438 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1213439 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1213473 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1223132 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1223191 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1223192 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1223226 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1366602 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1366661 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1366662 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1366696 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1474467 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1474526 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1474527 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1474561 Score = 129 bits (142), Expect = 4e-25 Identities = 84/91 (92%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-GGTAATCTCGTTAAT 25960 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || Sbjct 1271583 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGAATCTCGTTCAT 1271642 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||||||||||||||||||| Sbjct 1271643 CCATTCATGCGCGTCACTAATTAGATGACGA 1271673 >seq24658 Length=19510 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||| | Sbjct 15641 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCAT 15700 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 15701 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 15735 >seq10830 Length=56971 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| Sbjct 50650 AAGCCCGTTCCGTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 50709 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 50710 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 50744 >seq362 Length=285733 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || ||| |||| Sbjct 250035 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATGTCGT 249976 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 249975 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 249941 >seq272 Length=681372 Score = 123 bits (136), Expect = 2e-23 Identities = 85/95 (89%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 459426 AAGCCC-TTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 459368 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 459367 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 459333 >seq24957 Length=375254 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 191104 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 191045 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||| ||||||| Sbjct 191044 TCATCCATTCATGCGCGTCACTAATTATATGACGA 191010 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 179843 CTCTCTTTTCAGAGTTCTTTTCAACTTTCCCTCATTGTACTTGTCGCCTATCGGTCTCAT 179784 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 179783 GCCCATATTTAGCCTTA 179767 >seq1404 Length=1759624 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||| |||||| | |||||||| Sbjct 716533 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAAATAGGGACAGTTGGAATCTCGT 716592 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 716593 TCATCCATTCATGCGCATCACTAATTAGATGACGA 716627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334845125364155