Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq10225 105 6e-18 seq339 105 6e-18 >seq10225 Length=9847 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || |||||| || || || || Sbjct 8933 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCG 8992 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 8993 GCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 9052 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || |||| ||| | || ||||| ||||| || Sbjct 9053 ACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTC 9112 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 9113 TTGACAAAGATCTGCATGCCT 9133 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || |||||| || || || || Sbjct 9161 GTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCC 9220 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 9221 GCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 9280 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || |||| ||| | || ||||| ||||| || Sbjct 9281 ACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTC 9340 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 9341 TTGACAAAGATCTGCATGCCT 9361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || |||||| | || || || Sbjct 9389 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCCAACTGCTTGCCG 9448 Query 114246 GCGTAGATG-AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 9449 GCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 9508 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||||| || || || |||| ||| | || ||||| ||||| || Sbjct 9509 GACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGT 9568 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 9569 CTTCACGAAGATCTGCATG 9587 >seq339 Length=724323 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || |||||||| || |||||||| ||| Sbjct 491749 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491690 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || || ||| |||| || ||||| ||||| ||| Sbjct 491689 GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGA 491630 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | || | |||||| | | || Sbjct 491629 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCC 491570 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 491569 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491519 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || |||||||| || |||||||| ||| Sbjct 491977 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491918 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || || ||| |||| || ||||| ||||| ||| Sbjct 491917 GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGA 491858 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | || | |||||| | | || Sbjct 491857 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCC 491798 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 491797 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491747 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || |||||||| || |||||||| ||| Sbjct 492205 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 492146 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || || ||| |||| || ||||| ||||| ||| Sbjct 492145 GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGA 492086 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | || | |||||| | | || Sbjct 492085 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCC 492026 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 492025 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || |||||||| || |||||||| ||| Sbjct 491521 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491462 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || || ||| |||| || ||||| ||||| ||| Sbjct 491461 GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGA 491402 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | || | |||||| | | || Sbjct 491401 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCA 491342 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| ||||| || || || || ||||||||| Sbjct 491341 ACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || |||||||| || |||||||| ||| Sbjct 491293 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491234 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || || ||| |||| || ||||| ||||| ||| Sbjct 491233 GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGA 491174 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | || | |||||| | | || Sbjct 491173 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCC 491114 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| ||||| || || || || || |||||| Sbjct 491113 ACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATG 491063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420006364698060